Literature DB >> 30745056

Copy Number Variation in Domestication.

Zoe N Lye1, Michael D Purugganan2.   

Abstract

Domesticated plants have long served as excellent models for studying evolution. Many genes and mutations underlying important domestication traits have been identified, and most causal mutations appear to be SNPs. Copy number variation (CNV) is an important source of genetic variation that has been largely neglected in studies of domestication. Ongoing work demonstrates the importance of CNVs as a source of genetic variation during domestication, and during the diversification of domesticated taxa. Here, we review how CNVs contribute to evolutionary processes underlying domestication, and review examples of domestication traits caused by CNVs. We draw from examples in plant species, but also highlight cases in animal systems that could illuminate the roles of CNVs in the domestication process.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Keywords:  crop domestication; deletion; diversification; evolution; genome; livestock; pan-genome; polymorphism; presence/absence variation; structural variants

Mesh:

Year:  2019        PMID: 30745056     DOI: 10.1016/j.tplants.2019.01.003

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  38 in total

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Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-05-30       Impact factor: 6.671

4.  Novel Fusarium wilt resistance genes uncovered in natural and cultivated strawberry populations are found on three non-homoeologous chromosomes.

Authors:  Dominique D A Pincot; Mitchell J Feldmann; Michael A Hardigan; Mishi V Vachev; Peter M Henry; Thomas R Gordon; Marta Bjornson; Alan Rodriguez; Nicolas Cobo; Randi A Famula; Glenn S Cole; Gitta L Coaker; Steven J Knapp
Journal:  Theor Appl Genet       Date:  2022-05-18       Impact factor: 5.574

5.  The Draft Genome of a Flat Peach (Prunus persica L. cv. '124 Pan') Provides Insights into Its Good Fruit Flavor Traits.

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6.  A systems genetics approach to deciphering the effect of dosage variation on leaf morphology in Populus.

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7.  A genome-wide survey of copy number variations reveals an asymmetric evolution of duplicated genes in rice.

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Journal:  BMC Biol       Date:  2020-06-26       Impact factor: 7.431

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Journal:  Genome Biol       Date:  2021-05-31       Impact factor: 13.583

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Authors:  Hosein Salehian-Dehkordi; Ya-Xi Xu; Song-Song Xu; Xin Li; Ling-Yun Luo; Ya-Jing Liu; Dong-Feng Wang; Yin-Hong Cao; Min Shen; Lei Gao; Ze-Hui Chen; Joseph T Glessner; Johannes A Lenstra; Ali Esmailizadeh; Meng-Hua Li; Feng-Hua Lv
Journal:  Front Genet       Date:  2021-05-20       Impact factor: 4.599

10.  Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice.

Authors:  Jae Young Choi; Zoe N Lye; Simon C Groen; Xiaoguang Dai; Priyesh Rughani; Sophie Zaaijer; Eoghan D Harrington; Sissel Juul; Michael D Purugganan
Journal:  Genome Biol       Date:  2020-02-05       Impact factor: 13.583

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