Literature DB >> 30742367

High-Throughput Yeast One-Hybrid Screens Using a Cell Surface gLUC Reporter.

Zheng Li1, Katia Bonaldi1, S Earl Kang1,2, Jose L Pruneda-Paz1,3.   

Abstract

Gene-centered yeast one-hybrid (Y1H) screens using arrayed genome-wide transcription factor (TF) clone collections provide a simple and effective strategy to identify TF-promoter interactions using a DNA fragment as bait. In an effort to improve the assay we recently developed a Y1H system that uses a cell surface Gaussia luciferase reporter (gLUC59). Compared to other available methods, this luciferase-based strategy requires a shorter processing time, enhances the throughput and improves result analysis of gene-centered Y1H screens. Here, we described the procedure to perform high-throughput screens using this novel strategy, which involves a protocol for mating two haploid yeast strains carrying an arrayed TF clone collection and a promoter::gLUC59 reporter, respectively, and a protocol for analyzing gLUC59 activity in the resulting diploid cells.
© 2019 by John Wiley & Sons, Inc. © 2019 John Wiley & Sons, Inc.

Entities:  

Keywords:  cell-surface gLUC reporter; gene-centered Y1H; transcription factor-promoter interaction; yeast one-hybrid screens

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Year:  2019        PMID: 30742367      PMCID: PMC6392058          DOI: 10.1002/cppb.20086

Source DB:  PubMed          Journal:  Curr Protoc Plant Biol        ISSN: 2379-8068


  23 in total

1.  Empirical analysis of transcriptional activity in the Arabidopsis genome.

Authors:  Kayoko Yamada; Jun Lim; Joseph M Dale; Huaming Chen; Paul Shinn; Curtis J Palm; Audrey M Southwick; Hank C Wu; Christopher Kim; Michelle Nguyen; Paul Pham; Rosa Cheuk; George Karlin-Newmann; Shirley X Liu; Bao Lam; Hitomi Sakano; Troy Wu; Guixia Yu; Molly Miranda; Hong L Quach; Matthew Tripp; Charlie H Chang; Jeong M Lee; Mitsue Toriumi; Marie M H Chan; Carolyn C Tang; Courtney S Onodera; Justine M Deng; Kenji Akiyama; Yasser Ansari; Takahiro Arakawa; Jenny Banh; Fumika Banno; Leah Bowser; Shelise Brooks; Piero Carninci; Qimin Chao; Nathan Choy; Akiko Enju; Andrew D Goldsmith; Mani Gurjal; Nancy F Hansen; Yoshihide Hayashizaki; Chanda Johnson-Hopson; Vickie W Hsuan; Kei Iida; Meagan Karnes; Shehnaz Khan; Eric Koesema; Junko Ishida; Paul X Jiang; Ted Jones; Jun Kawai; Asako Kamiya; Cristina Meyers; Maiko Nakajima; Mari Narusaka; Motoaki Seki; Tetsuya Sakurai; Masakazu Satou; Racquel Tamse; Maria Vaysberg; Erika K Wallender; Cecilia Wong; Yuki Yamamura; Shiaulou Yuan; Kazuo Shinozaki; Ronald W Davis; Athanasios Theologis; Joseph R Ecker
Journal:  Science       Date:  2003-10-31       Impact factor: 47.728

2.  A gateway-compatible yeast one-hybrid system.

Authors:  Bart Deplancke; Denis Dupuy; Marc Vidal; Albertha J M Walhout
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

3.  Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping.

Authors:  Vanessa Vermeirssen; Bart Deplancke; M Inmaculada Barrasa; John S Reece-Hoyes; H Efsun Arda; Christian A Grove; Natalia J Martinez; Reynaldo Sequerra; Lynn Doucette-Stamm; Michael R Brent; Albertha J M Walhout
Journal:  Nat Methods       Date:  2007-06-24       Impact factor: 28.547

4.  Construction of Arabidopsis Transcription Factor ORFeome Collections and Identification of Protein-DNA Interactions by High-Throughput Yeast One-Hybrid Screens.

Authors:  S Earl Kang; Ghislain Breton; Jose L Pruneda-Paz
Journal:  Methods Mol Biol       Date:  2018

5.  Transcript abundance in yeast varies over six orders of magnitude.

Authors:  Michael J Holland
Journal:  J Biol Chem       Date:  2002-03-06       Impact factor: 5.157

6.  Enhanced Y1H assays for Arabidopsis.

Authors:  Allison Gaudinier; Lifang Zhang; John S Reece-Hoyes; Mallorie Taylor-Teeples; Li Pu; Zhijie Liu; Ghislain Breton; Jose L Pruneda-Paz; Dahae Kim; Steve A Kay; Albertha J M Walhout; Doreen Ware; Siobhan M Brady
Journal:  Nat Methods       Date:  2011-10-30       Impact factor: 28.547

7.  A genome-scale resource for the functional characterization of Arabidopsis transcription factors.

Authors:  Jose L Pruneda-Paz; Ghislain Breton; Dawn H Nagel; S Earl Kang; Katia Bonaldi; Colleen J Doherty; Stephanie Ravelo; Mary Galli; Joseph R Ecker; Steve A Kay
Journal:  Cell Rep       Date:  2014-07-17       Impact factor: 9.423

8.  Identification of Arabidopsis Transcriptional Regulators by Yeast One-Hybrid Screens Using a Transcription Factor ORFeome.

Authors:  Ghislain Breton; Steve A Kay; José L Pruneda-Paz
Journal:  Methods Mol Biol       Date:  2016

9.  A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock.

Authors:  Jose L Pruneda-Paz; Ghislain Breton; Alessia Para; Steve A Kay
Journal:  Science       Date:  2009-03-13       Impact factor: 47.728

10.  Novel cell surface luciferase reporter for high-throughput yeast one-hybrid screens.

Authors:  Katia Bonaldi; Zheng Li; S Earl Kang; Ghislain Breton; Jose L Pruneda-Paz
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

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  2 in total

1.  A genome-scale TF-DNA interaction network of transcriptional regulation of Arabidopsis primary and specialized metabolism.

Authors:  Michelle Tang; Baohua Li; Xue Zhou; Tayah Bolt; Jia Jie Li; Neiman Cruz; Allison Gaudinier; Richard Ngo; Caitlin Clark-Wiest; Daniel J Kliebenstein; Siobhan M Brady
Journal:  Mol Syst Biol       Date:  2021-11       Impact factor: 11.429

Review 2.  Research Advances and Prospects of Orphan Genes in Plants.

Authors:  Mingliang Jiang; Xiaonan Li; Xiangshu Dong; Ye Zu; Zongxiang Zhan; Zhongyun Piao; Hong Lang
Journal:  Front Plant Sci       Date:  2022-07-08       Impact factor: 6.627

  2 in total

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