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Literature DB >> 30742026

Tracing outbreaks with machine learning.

Nicole E Wheeler¹.

Abstract

Entities: Chemical

Mesh：

Year: 2019 PMID： 30742026 DOI： 10.1038/s41579-019-0153-1

Source DB: PubMed Journal: Nat Rev Microbiol ISSN： 1740-1526 Impact factor: 60.633

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2 in total

1. Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli.

Authors: Nadejda Lupolova; Tim J Dallman; Nicola J Holden; David L Gally
Journal: Microb Genom Date: 2017-10-03

2. Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.

Authors: Shaokang Zhang; Shaoting Li; Weidong Gu; Henk den Bakker; Dave Boxrud; Angie Taylor; Chandler Roe; Elizabeth Driebe; David M Engelthaler; Marc Allard; Eric Brown; Patrick McDermott; Shaohua Zhao; Beau B Bruce; Eija Trees; Patricia I Fields; Xiangyu Deng
Journal: Emerg Infect Dis Date: 2019-01 Impact factor: 6.883

2 in total

10 in total

1. A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes.

Authors: Margo VanOeffelen; Marcus Nguyen; Derya Aytan-Aktug; Thomas Brettin; Emily M Dietrich; Ronald W Kenyon; Dustin Machi; Chunhong Mao; Robert Olson; Gordon D Pusch; Maulik Shukla; Rick Stevens; Veronika Vonstein; Andrew S Warren; Alice R Wattam; Hyunseung Yoo; James J Davis
Journal: Brief Bioinform Date: 2021-11-05 Impact factor: 13.994

2. Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions.

Authors: John A Lees; T Tien Mai; Marco Galardini; Nicole E Wheeler; Samuel T Horsfield; Julian Parkhill; Jukka Corander
Journal: mBio Date: 2020-07-07 Impact factor: 7.867

3. Genetic and metabolic signatures of Salmonella enterica subsp. enterica associated with animal sources at the pangenomic scale.

Authors: Meryl Vila Nova; Kévin Durimel; Kévin La; Arnaud Felten; Philippe Bessières; Michel-Yves Mistou; Mahendra Mariadassou; Nicolas Radomski
Journal: BMC Genomics Date: 2019-11-06 Impact factor: 3.969

4. Four European Salmonella Typhimurium datasets collected to develop WGS-based source attribution methods.

Authors: Nanna Munck; Pimlapas Leekitcharoenphon; Eva Litrup; Rolf Kaas; Anika Meinen; Laurent Guillier; Yue Tang; Burkhard Malorny; Federica Palma; Maria Borowiak; Michèle Gourmelon; Sandra Simon; Sangeeta Banerji; Liljana Petrovska; Timothy J Dallman; Tine Hald
Journal: Sci Data Date: 2020-03-03 Impact factor: 6.444

5. AB_SA: Accessory genes-Based Source Attribution - tracing the source of Salmonella enterica Typhimurium environmental strains.

Authors: Laurent Guillier; Michèle Gourmelon; Solen Lozach; Sabrina Cadel-Six; Marie-Léone Vignaud; Nanna Munck; Tine Hald; Federica Palma
Journal: Microb Genom Date: 2020-07

10. Comparing serotyping with whole-genome sequencing for subtyping of non-typhoidal Salmonella enterica: a large-scale analysis of 37 serotypes with a public health impact in the USA.

Authors: Ehud Elnekave; Samuel L Hong; Seunghyun Lim; Timothy J Johnson; Andres Perez; Julio Alvarez
Journal: Microb Genom Date: 2020-08-26