Literature DB >> 30738099

Prediction of causal genes and gene expression analysis of attention-deficit hyperactivity disorder in the different brain region, a comprehensive integrative analysis of ADHD.

Aamir Fahira1, Zhiqiang Li2, Ning Liu3, Yongyong Shi4.   

Abstract

Recent genome-wide association study (GWAS) identified 12 independent loci for Attention-deficit hyperactivity disorder (ADHD). However, the causal genes expression and pathways of ADHD is still vague. We integrated GWAS, eQTL and genes expression data to find the causal genes, genes expression, and genes prioritization in the different brain tissues and whole blood cells. Overall 47 genes were prioritized, the most promising genes were LSG1, HYAL3, PIDD, PNPLA2, BLOC1S2, PLK1S1, CALN1, KAT2B, CTNNB1 and WDR11. Whereas, the CALN1, KAT2B, and WDR11 were previously associated with schizophrenia (SZ), bipolar (BP) and drug abuse. Gene ontology analysis shows that the glutamate receptor signaling pathway (P = 8.009E-07, with false discovery rate (FDR) < 5%), GRIK5 sub network (P = 2.887E-06, FDR < 5%), abnormal gait (P = 3.657E-06, FDR < 5%), REACTOME_SIGNALING_BY_ERBB2 (P = 5.161E-06, FDR < 5%), and abnormal nervous system physiology (P = 5.239E-06, FDR < 5%) were associated with ADHD. These causal genes were highly expressed in Fetal Astrocytes, Neurons, and Microglia/Macrophage. This study illustrates the comprehensive GWAS integrative approach of ADHD. However, further genetic and functional studies are required to validate the role of these genes in the etiology of ADHD, which should provide novel insights into the understanding of this disease.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  ADHD; Causal gene expression; GWAS; Integration analysis; Protein-protein interaction network; eQTL

Mesh:

Substances:

Year:  2019        PMID: 30738099     DOI: 10.1016/j.bbr.2019.02.010

Source DB:  PubMed          Journal:  Behav Brain Res        ISSN: 0166-4328            Impact factor:   3.332


  7 in total

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Authors:  Amit Jairaman; Amanda McQuade; Alberto Granzotto; You Jung Kang; Jean Paul Chadarevian; Sunil Gandhi; Ian Parker; Ian Smith; Hansang Cho; Stefano L Sensi; Shivashankar Othy; Mathew Blurton-Jones; Michael D Cahalan
Journal:  Elife       Date:  2022-02-22       Impact factor: 8.713

2.  Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes.

Authors:  Calwing Liao; Alexandre D Laporte; Dan Spiegelman; Fulya Akçimen; Ridha Joober; Patrick A Dion; Guy A Rouleau
Journal:  Nat Commun       Date:  2019-10-01       Impact factor: 14.919

3.  Integrative analyses indicate an association between ITIH3 polymorphisms with autism spectrum disorder.

Authors:  Xinyan Xie; Heng Meng; Hao Wu; Fang Hou; Yanlin Chen; Yu Zhou; Qi Xue; Jiajia Zhang; Jianhua Gong; Li Li; Ranran Song
Journal:  Sci Rep       Date:  2020-03-23       Impact factor: 4.379

4.  Differentiation and comorbidity of bipolar disorder and attention deficit and hyperactivity disorder in children, adolescents, and adults: A clinical and nosological perspective.

Authors:  Anna Comparelli; Lorenzo Polidori; Giuseppe Sarli; Andrea Pistollato; Maurizio Pompili
Journal:  Front Psychiatry       Date:  2022-08-11       Impact factor: 5.435

5.  Comprehensive analysis of omics data identifies relevant gene networks for Attention-Deficit/Hyperactivity Disorder (ADHD).

Authors:  Judit Cabana-Domínguez; María Soler Artigas; Lorena Arribas; Silvia Alemany; Laura Vilar-Ribó; Natalia Llonga; Christian Fadeuilhe; Montse Corrales; Vanesa Richarte; Josep Antoni Ramos-Quiroga; Marta Ribasés
Journal:  Transl Psychiatry       Date:  2022-09-24       Impact factor: 7.989

6.  Identification of genetic overlap and novel risk loci for attention-deficit/hyperactivity disorder and bipolar disorder.

Authors:  Kevin S O'Connell; Alexey Shadrin; Shahram Bahrami; Olav B Smeland; Francesco Bettella; Oleksandr Frei; Florian Krull; Ragna B Askeland; G Bragi Walters; Katrín Davíðsdóttir; Gyða S Haraldsdóttir; Ólafur Ó Guðmundsson; Hreinn Stefánsson; Chun C Fan; Nils Eiel Steen; Ted Reichborn-Kjennerud; Anders M Dale; Kári Stefánsson; Srdjan Djurovic; Ole A Andreassen
Journal:  Mol Psychiatry       Date:  2019-12-02       Impact factor: 15.992

Review 7.  Brain Branched-Chain Amino Acids in Maple Syrup Urine Disease: Implications for Neurological Disorders.

Authors:  Jing Xu; Youseff Jakher; Rebecca C Ahrens-Nicklas
Journal:  Int J Mol Sci       Date:  2020-10-11       Impact factor: 5.923

  7 in total

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