Literature DB >> 30737014

Predicting Polygenic Risk of Psychiatric Disorders.

Alicia R Martin1, Mark J Daly2, Elise B Robinson3, Steven E Hyman4, Benjamin M Neale2.   

Abstract

Genetics provides two major opportunities for understanding human disease-as a transformative line of etiological inquiry and as a biomarker for heritable diseases. In psychiatry, biomarkers are very much needed for both research and treatment, given the heterogenous populations identified by current phenomenologically based diagnostic systems. To date, however, useful and valid biomarkers have been scant owing to the inaccessibility and complexity of human brain tissue and consequent lack of insight into disease mechanisms. Genetic biomarkers are therefore especially promising for psychiatric disorders. Genome-wide association studies of common diseases have matured over the last decade, generating the knowledge base for increasingly informative individual-level genetic risk prediction. In this review, we discuss fundamental concepts involved in computing genetic risk with current methods, strengths and weaknesses of various approaches, assessments of utility, and applications to various psychiatric disorders and related traits. Although genetic risk prediction has become increasingly straightforward to apply and common in published studies, there are important pitfalls to avoid. At present, the clinical utility of genetic risk prediction is still low; however, there is significant promise for future clinical applications as the ancestral diversity and sample sizes of genome-wide association studies increase. We discuss emerging data and methods aimed at improving the value of genetic risk prediction for disentangling disease mechanisms and stratifying subjects for epidemiological and clinical studies. For all applications, it is absolutely critical that polygenic risk prediction is applied with appropriate methodology and control for confounding to avoid repeating some mistakes of the candidate gene era.
Copyright © 2019 Society of Biological Psychiatry. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Complex traits; Heritability; Liability threshold model; Polygenic risk scores; Population genetics; Precision medicine; Psychiatric disorders; Psychiatric genetics; Statistical genetics

Mesh:

Year:  2018        PMID: 30737014      PMCID: PMC6599546          DOI: 10.1016/j.biopsych.2018.12.015

Source DB:  PubMed          Journal:  Biol Psychiatry        ISSN: 0006-3223            Impact factor:   13.382


  113 in total

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3.  Autism spectrum disorder severity reflects the average contribution of de novo and familial influences.

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4.  Patterns and rates of exonic de novo mutations in autism spectrum disorders.

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5.  Simultaneous discovery, estimation and prediction analysis of complex traits using a bayesian mixture model.

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6.  Using Genetic Distance to Infer the Accuracy of Genomic Prediction.

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7.  Generalization and dilution of association results from European GWAS in populations of non-European ancestry: the PAGE study.

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8.  Biological insights from 108 schizophrenia-associated genetic loci.

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Journal:  Nature       Date:  2014-07-22       Impact factor: 49.962

9.  Defining the role of common variation in the genomic and biological architecture of adult human height.

Authors:  Andrew R Wood; Tonu Esko; Jian Yang; Sailaja Vedantam; Tune H Pers; Stefan Gustafsson; Audrey Y Chu; Karol Estrada; Jian'an Luan; Zoltán Kutalik; Najaf Amin; Martin L Buchkovich; Damien C Croteau-Chonka; Felix R Day; Yanan Duan; Tove Fall; Rudolf Fehrmann; Teresa Ferreira; Anne U Jackson; Juha Karjalainen; Ken Sin Lo; Adam E Locke; Reedik Mägi; Evelin Mihailov; Eleonora Porcu; Joshua C Randall; André Scherag; Anna A E Vinkhuyzen; Harm-Jan Westra; Thomas W Winkler; Tsegaselassie Workalemahu; Jing Hua Zhao; Devin Absher; Eva Albrecht; Denise Anderson; Jeffrey Baron; Marian Beekman; Ayse Demirkan; Georg B Ehret; Bjarke Feenstra; Mary F Feitosa; Krista Fischer; Ross M Fraser; Anuj Goel; Jian Gong; Anne E Justice; Stavroula Kanoni; Marcus E Kleber; Kati Kristiansson; Unhee Lim; Vaneet Lotay; Julian C Lui; Massimo Mangino; Irene Mateo Leach; Carolina Medina-Gomez; Michael A Nalls; Dale R Nyholt; Cameron D Palmer; Dorota Pasko; Sonali Pechlivanis; Inga Prokopenko; Janina S Ried; Stephan Ripke; 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Journal:  Mol Psychiatry       Date:  2016-01-26       Impact factor: 15.992

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  64 in total

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3.  Personal Life Events-A Promising Dimension for Psychiatry in Electronic Health Records.

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4.  Evaluating chronic emotional dysregulation and irritability in relation to ADHD and depression genetic risk in children with ADHD.

Authors:  Joel T Nigg; Sarah L Karalunas; Hanna C Gustafsson; Priya Bhatt; Peter Ryabinin; Michael A Mooney; Stephen V Faraone; Damien A Fair; Beth Wilmot
Journal:  J Child Psychol Psychiatry       Date:  2019-10-12       Impact factor: 8.982

Review 5.  Exploiting Circulating MicroRNAs as Biomarkers in Psychiatric Disorders.

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Review 6.  Polygenic risk score as clinical utility in psychiatry: a clinical viewpoint.

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Review 7.  Four Actionable Bottlenecks and Potential Solutions to Translating Psychiatric Genetics Research: An Expert Review.

Authors:  Jessica L Bourdon; Rachel A Davies; Elizabeth C Long
Journal:  Public Health Genomics       Date:  2020-11-04       Impact factor: 2.000

8.  Sibling comparisons elucidate the associations between educational attainment polygenic scores and alcohol, nicotine and cannabis.

Authors:  Jessica E Salvatore; Peter B Barr; Mallory Stephenson; Fazil Aliev; Sally I-Chun Kuo; Jinni Su; Arpana Agrawal; Laura Almasy; Laura Bierut; Kathleen Bucholz; Grace Chan; Howard J Edenberg; Emma C Johnson; Vivia V McCutcheon; Jacquelyn L Meyers; Marc Schuckit; Jay Tischfield; Leah Wetherill; Danielle M Dick
Journal:  Addiction       Date:  2019-10-28       Impact factor: 6.526

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Review 10.  Computational approaches and machine learning for individual-level treatment predictions.

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