Literature DB >> 30735835

Geobiological feedbacks, oxygen, and the evolution of nitrogenase.

Florence Mus1, Daniel R Colman2, John W Peters3, Eric S Boyd4.   

Abstract

Biological nitrogen fixation via the activity of nitrogenase is one of the most important biological innovations, allowing for an increase in global productivity that eventually permitted the emergence of higher forms of life. The complex metalloenzyme termed nitrogenase contains complex iron-sulfur cofactors. Three versions of nitrogenase exist that differ mainly by the presence or absence of a heterometal at the active site metal cluster (either Mo or V). Mo-dependent nitrogenase is the most common while V-dependent or heterometal independent (Fe-only) versions are often termed alternative nitrogenases since they have apparent lower activities for N2 reduction and are expressed in the absence of Mo. Phylogenetic data indicates that biological nitrogen fixation emerged in an anaerobic, thermophilic ancestor of hydrogenotrophic methanogens and later diversified via lateral gene transfer into anaerobic bacteria, and eventually aerobic bacteria including Cyanobacteria. Isotopic evidence suggests that nitrogenase activity existed at 3.2 Ga, prior to the advent of oxygenic photosynthesis and rise of oxygen in the atmosphere, implying the presence of favorable environmental conditions for oxygen-sensitive nitrogenase to evolve. Following the proliferation of oxygenic phototrophs, diazotrophic organisms had to develop strategies to protect nitrogenase from oxygen inactivation and generate the right balance of low potential reducing equivalents and cellular energy for growth and nitrogen fixation activity. Here we review the fundamental advances in our understanding of biological nitrogen fixation in the context of the emergence, evolution, and taxonomic distribution of nitrogenase, with an emphasis placed on key events associated with its emergence and diversification from anoxic to oxic environments.
Copyright © 2019. Published by Elsevier Inc.

Entities:  

Keywords:  Biological nitrogen fixation; Great oxidation event; Iron; Iron-sulfur; Methanogens; Molybdenum; Nitrogenase; Oxygen; Vanadium

Mesh:

Substances:

Year:  2019        PMID: 30735835     DOI: 10.1016/j.freeradbiomed.2019.01.050

Source DB:  PubMed          Journal:  Free Radic Biol Med        ISSN: 0891-5849            Impact factor:   7.376


  10 in total

Review 1.  Reactivity, Mechanism, and Assembly of the Alternative Nitrogenases.

Authors:  Andrew J Jasniewski; Chi Chung Lee; Markus W Ribbe; Yilin Hu
Journal:  Chem Rev       Date:  2020-03-04       Impact factor: 60.622

Review 2.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

Review 3.  Molecular Biology in the Improvement of Biological Nitrogen Fixation by Rhizobia and Extending the Scope to Cereals.

Authors:  Ravinder K Goyal; Maria Augusta Schmidt; Michael F Hynes
Journal:  Microorganisms       Date:  2021-01-07

4.  Nitrogen-fixing Ability and Nitrogen Fixation-related Genes of Thermophilic Fermentative Bacteria in the Genus Caldicellulosiruptor.

Authors:  Yuxin Chen; Arisa Nishihara; Shin Haruta
Journal:  Microbes Environ       Date:  2021       Impact factor: 2.912

5.  Reconstruction of Nitrogenase Predecessors Suggests Origin from Maturase-Like Proteins.

Authors:  Amanda K Garcia; Bryan Kolaczkowski; Betül Kaçar
Journal:  Genome Biol Evol       Date:  2022-03-02       Impact factor: 3.416

6.  Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments.

Authors:  Xiyang Dong; Chuwen Zhang; Yongyi Peng; Hong-Xi Zhang; Ling-Dong Shi; Guangshan Wei; Casey R J Hubert; Yong Wang; Chris Greening
Journal:  Nat Commun       Date:  2022-08-19       Impact factor: 17.694

Review 7.  How Microbes Evolved to Tolerate Oxygen.

Authors:  Maryam Khademian; James A Imlay
Journal:  Trends Microbiol       Date:  2020-10-24       Impact factor: 17.079

8.  Reconstructing the evolutionary history of nitrogenases: Evidence for ancestral molybdenum-cofactor utilization.

Authors:  Amanda K Garcia; Hanon McShea; Bryan Kolaczkowski; Betül Kaçar
Journal:  Geobiology       Date:  2020-02-17       Impact factor: 4.407

9.  A Genetic Study of Nif-Associated Genes in a Hyperthermophilic Methanogen.

Authors:  Thomas J Lie; Yang P Kuo; Mara Leite; Kyle C Costa; Caroline S Harwood; John A Leigh
Journal:  Microbiol Spectr       Date:  2022-02-02

10.  Radiation of nitrogen-metabolizing enzymes across the tree of life tracks environmental transitions in Earth history.

Authors:  Chris Parsons; Eva E Stüeken; Caleb J Rosen; Katherine Mateos; Rika E Anderson
Journal:  Geobiology       Date:  2020-10-27       Impact factor: 4.216

  10 in total

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