| Literature DB >> 30734544 |
Parikshat Sirpal1, Ali Kassab2, Philippe Pouliot1,3, Dang Khoa Nguyen2, Frédéric Lesage1,3.
Abstract
In the context of epilepsy monitoring, electroencephalography (EEG) remains the modality of choice. Functional near-infrared spectroscopy (fNIRS) is a relatively innovative modality that cannot only characterize hemodynamic profiles of seizures but also allow for long-term recordings. We employ deep learning methods to investigate the benefits of integrating fNIRS measures for seizure detection. We designed a deep recurrent neural network with long short-term memory units and subsequently validated it using the CHBMIT scalp EEG database-a compendium of 896 h of surface EEG seizure recordings. After validating our network using EEG, fNIRS, and multimodal data comprising a corpus of 89 seizures from 40 refractory epileptic patients was used as model input to evaluate the integration of fNIRS measures. Following heuristic hyperparameter optimization, multimodal EEG-fNIRS data provide superior performance metrics (sensitivity and specificity of 89.7% and 95.5%, respectively) in a seizure detection task, with low generalization errors and loss. False detection rates are generally low, with 11.8% and 5.6% for EEG and multimodal data, respectively. Employing multimodal neuroimaging, particularly EEG-fNIRS, in epileptic patients, can enhance seizure detection performance. Furthermore, the neural network model proposed and characterized herein offers a promising framework for future multimodal investigations in seizure detection and prediction.Entities:
Keywords: deep neural networks; electroencephalography-functional near-infrared spectroscopy; epilepsy; functional brain imaging; seizure detection
Mesh:
Year: 2019 PMID: 30734544 PMCID: PMC6992892 DOI: 10.1117/1.JBO.24.5.051408
Source DB: PubMed Journal: J Biomed Opt ISSN: 1083-3668 Impact factor: 3.170
Clinical profiles of refractory epilepsy patients.
| Patient | Age, sex | Total recordings | Epilepsy classification | MRI findings | EEG focus | fNIRS focus |
|---|---|---|---|---|---|---|
| 1 | 11, M | 9 | R FLE | N | RF | RF |
| 2 | 21, M | 11 | L FLE | N | LF | Bi-F (L > R) |
| 3 | 13, F | 2 | R FPLE | N | LP | LP |
| 4 | 35, F | 4 | R FLE | N | RF | RF |
| 5 | 25, F | 5 | R FLE | N | LF | LF |
| 6 | 16, M | 7 | L FLE | RF encephalomalacia | LF | PF |
| 7 | 63, M | 5 | L TLE | N | LT | LT |
| 8 | 47, F | 3 | R LNTLE | N | Bi-T | LT |
| 9 | 23, M | 5 | R FLE | N | RF | RF |
| 10 | 43, M | 8 | R FLE | RF encephalomalacia | RF | RF |
| 11 | 19, F | 4 | L MBTLE | N | RT | RT |
| 12 | 45, M | 7 | R FLE | N | Bi-F (R > L) | Bi-F |
| 13 | 38, F | 1 | L LNTLE | N | LF | LFT |
| 14 | 53, F | 11 | L LFPLE | N | LFP | Bi-F (L > R) |
| 15 | 24, M | 6 | L LNTLE | N | RT | RT |
| 16 | 31, M | 3 | Bi-MBTLE | R HA | Bi-T (R > L) | RT |
| 17 | 31, M | 11 | R LNTLE | N | RT | RT |
| 18 | 23, M | 6 | R FPLE | RF CD | RF | RF |
| 19 | 27, M | 3 | R FLE | N | RF | RF |
| 20 | 21, M | 11 | R FLE | RHA | RT | RF |
| 21 | 50, M | 6 | L MBTLE | LHA | Bi-F | RF |
| 22 | 38, F | 5 | R LNTLE | N | RT | RT |
| 23 | 34, M | 10 | L LNTLE | N | LT | LT |
| 24 | 56, M | 7 | R FLE | N | RF | RF |
| 25 | 11, M | 4 | R LNTLE | N | RT | RT |
| 26 | 43, M | 5 | L LPTLE | N | LT | LP |
| 27 | 24, M | 3 | R FLE | N | RF | RF |
| 28 | 46, M | 7 | L FLE | N | LF | LF |
| 29 | 30, F | 5 | L LNTLE | N | LT | LT |
| 30 | 62, F | 6 | L FLE | N | LF | LF |
| 31 | 43, M | 8 | L FLE | N | LF | LF |
| 32 | 13, M | 6 | Bi-LNTLE | N | Bi-T | Bi-T |
| 33 | 22, M | 5 | R FLE | N | RF | RF |
| 34 | 25, M | 7 | R FLE | N | RF | RF |
| 35 | 28, M | 9 | L FLE | N | LF | LF |
| 36 | 44, F | 7 | R FLE | N | RF | RF |
| 37 | 49, M | 3 | R FLE | N | RF | RF |
| 38 | 32, M | 2 | R FLE | N | RF | RF |
| 39 | 19, F | 4 | R FLE | N | RF | RF |
| 40 | 19, F | 3 | R FLE | N | RF | Bi-F (R > L) |
Note: F, female; M, male; FLE, frontal lobe epilepsy; FPLE, fronto-parietal lobe epilepsy; OLE, occipital lobe epilepsy; NTLE, neocortical temporal lobe epilepsy; MTLE, mesial temporal lobe epilepsy; RF, right frontal, LF, left frontal, Bi, bilateral, P, parietal. F, frontal, P, parietal, N, normal, L, left, R, right; HA, hippocampal atrophy, CD, cortical dysplasia, RHA, right hippocampal atrophy, and LHA, left hippocampal atrophy.
Fig. 1LSTM unit structure. The input is fed into LSTM units with 64 hidden units followed by a final dense layer. The input gate decides which values will be updated and creates a vector of new values to be added and updated to the state. After data input, the LSTM’s forget gate decides which information to discard. This gate examines the prior hidden state () and current input, yielding a binary output. Subsequently, the LSTM decides what new information to store in the cell state. Finally, the LSTM unit decides sequential output, which is based on the current cell state. The sigmoid and hyperbolic activation functions determine which parts of the cell state to output.
LSTM-RNN heuristic hyperparameters.
| Hyperparameters | Value | Method |
|---|---|---|
| Learning rate | Adam | |
| Epochs | 100 | Experimental |
| Batch size | 784 | Experimental |
| LSTM units | 10 | Experimental |
A comparison of selected studies in the automated detection of seizure using EEG signals from the Bonn and CHBMIT databases.
| Author | Year | Database | Research innovation | Neural network architecture | Performance (%) |
|---|---|---|---|---|---|
| Ghosh-Dastidar et al. | 2007 | Bonn | Wavelet-chaos | ANN | Accuracy = 96.7 |
| Shoeb et al. | 2004 | CHBMIT | SVM | ANN | Accuracy = 96 |
| Chua et al. | 2009 | Bonn | Entropy feature determination | Gaussian mixture models | Accuracy = 93.1 Sensitivity = 89.7 Specificity = 94.8 |
| Acharya et al. | 2017 | Bonn | Ten-fold cross validation | CNN | Accuracy = 88.7 Sensitivity = 95.0 Specificity = 90 |
| Shoeb et al. | 2009 | CHBMIT | Patient-specific detection | ANN, SVM | Accuracy = 96 |
| Martis et al. | 2012 | Bonn | Empirical mode decomposition (Hilbert–Huang transformation) | Decision trees | Accuracy = 95.3 Sensitivity = 98.0 Specificity = 97.0 |
| Guo et al. | 2011 | Bonn | Genetic programming | ANN with | Accuracy = 93.5 |
| Bhattacharyaa et al. | 2017 | Bonn | Tunable | ANN, SVM | Accuracy = 99.4 Sensitivity = 97.9 Specificity = 99.5 |
| This work | 2018 | CHBMIT | Validation of LSTM-RNN model | LSTM-RNN | Accuracy = 98.2 Sensitivity = 95.9 Specificity = 92.1 |
Note: AAN, artificial neural network; CNN, convolutional neural network; SVM, support vector machine; and LSTM-RNN, long short-term memory RNNs.
Performance results for EEG data derived from the CHBMIT dataset and our in-house EEG data.
| Data | Epochs | Mean accuracy (%) | ROC |
|---|---|---|---|
| CHBMIT EEG | 100 | 98.20 | 0.94 |
| In-house EEG | 100 | 97.60 | 0.90 |
Fig. 2Multimodal recordings from patient 10, a 43-year-old male. On the day of the recording, the patient experienced multiple seizure events ranging from duration of 3 to 10 s, with an average duration of 7 s. The analyzed EEG recording is shown in (a), with the colored green bars representing seizure events and false positives denoted by orange horizontal lines. The hemodynamic response to marked events and network events (with false detections) and the corresponding cerebral topographic analysis are shown in (b) and (c). Red and blue curves represent oxygenated (HbO) and deoxygenated (HbR) hemoglobin, respectively. Solid red and blue and dashed red and blue lines correspond to the right (R- ) and left (L- ) side of the brain, respectively.
The overall classification result across all 10-folds for each data type. Multimodal data consistently provided superior results compared to stand-alone EEG or fNIRS data alone.
| Mean value post cross validation, | |
|---|---|
| Accuracy | |
| EEG | |
| fNIRS | |
| EEG-fNIRS | |
| Precision | |
| EEG | |
| fNIRS | |
| EEG-fNIRS | |
| Recall | |
| EEG | |
| fNIRS | |
| EEG-fNIRS | |
Note: SD, standard deviation.