| Literature DB >> 30728063 |
Xavier Badia-Rius1, Hannah Betts1, David H Molyneux1, Louise A Kelly-Hope2.
Abstract
BACKGROUND: Loiasis is caused by the filarial parasite Loa loa, which is widespread through Central and West Africa and largely confined the tropical equatorial rainforests. The tabanid flies Chrysops silacea and Chrysops dimidiata are the main vectors driving transmission. This study aimed to better define the spatial distribution and ecological niche of the two vectors to help define spatial-temporal risk and target appropriate, timely intervention strategies for filariasis control and elimination programmes.Entities:
Keywords: Africa; Chrysops dimidiata; Chrysops silacea; Climate; Ecology; Environment; Loa loa; Loiasis; MaxEnt; Rainforest
Mesh:
Year: 2019 PMID: 30728063 PMCID: PMC6366063 DOI: 10.1186/s13071-019-3327-9
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Fig. 1Diagram of methodology used in Chrysops data points
Fig. 2Map of Chrysops locations in the Central African countries
Descriptive statistics of the different environmental variables by vector species and country
| Species | Country |
| Statistic | Annual mean temperature (°C) | Mean temperature warmest quarter (°C) | Mean temperature coldest quarter (°C) | Annual precipitation (mm) | Precipitation wettest quarter (mm) | Precipitation driest quarter (mm) | Elevation (m) |
|---|---|---|---|---|---|---|---|---|---|---|
|
| Cameroon | 33 | Mean | 23.4 | 24.3 | 22.4 | 1939.0 | 854.8 | 103.0 | 550.1 |
| SD | 2.7 | 2.8 | 2.7 | 474.3 | 269.8 | 38.0 | 313.7 | |||
| DRC | 30 | Mean | 24.9 | 25.9 | 23.4 | 1596.4 | 591.4 | 123.2 | 448.3 | |
| SD | 0.8 | 1.0 | 1.1 | 324.3 | 57.7 | 108.6 | 216.6 | |||
| Equatorial Guinea | 4 | Mean | 18.0 | 18.6 | 17.3 | 1832.2 | 772.8 | 114.0 | 201.4 | |
| SD | 2.7 | 2.8 | 2.6 | 431.4 | 190.2 | 25.3 | 206.5 | |||
| Gabon | 1 | Mean | 24.0 | 24.9 | 22.4 | 1646.1 | 668.6 | 93.1 | 493.6 | |
| SD | – | – | – | – | – | – | – | |||
| Nigeria | 37 | Mean | 26.4 | 27.8 | 25.0 | 2063.5 | 901.0 | 81.7 | 127.0 | |
| SD | 0.7 | 0.7 | 0.8 | 597.5 | 253.4 | 44.5 | 137.0 | |||
| Congo | 8 | Mean | 23.9 | 25.1 | 21.8 | 1559.8 | 657.2 | 13.0 | 428.6 | |
| SD | 0.9 | 0.7 | 1.3 | 85.7 | 53.5 | 13.5 | 55.1 | |||
| South Sudan | 2 | Mean | 24.7 | 26.0 | 23.5 | 1454.3 | 597.8 | 46.1 | 687.7 | |
| SD | 0.3 | 0.6 | 0.0 | 3.4 | 19.4 | 2.5 | 49.8 | |||
| Overall | 115 | Mean | 24.6 | 25.7 | 23.3 | 1848.6 | 778.3 | 94.5 | 368.8 | |
| SD | 2.4 | 2.6 | 2.3 | 501.0 | 245.3 | 69.8 | 283.1 | |||
|
| Cameroon | 32 | Mean | 23.7 | 24.6 | 22.7 | 1849.5 | 794.9 | 103.8 | 540.1 |
| SD | 2.5 | 2.6 | 2.4 | 435.4 | 229.1 | 35.6 | 275.6 | |||
| DRC | 13 | Mean | 24.6 | 25.6 | 23.0 | 1505.2 | 572.2 | 123.8 | 415.0 | |
| SD | 0.7 | 0.9 | 1.3 | 359.2 | 64.8 | 128.8 | 230.2 | |||
| Equatorial Guinea | 6 | Mean | 21.0 | 21.6 | 20.1 | 2145.8 | 906.6 | 127.2 | 235.1 | |
| SD | 3.4 | 3.5 | 3.3 | 385.5 | 159.5 | 23.3 | 150.9 | |||
| Gabon | 1 | Mean | 24.0 | 24.9 | 22.4 | 1646.1 | 668.6 | 93.1 | 493.6 | |
| SD | – | – | – | – | – | – | – | |||
| Nigeria | 11 | Mean | 26.5 | 27.6 | 25.3 | 2448.4 | 1076.2 | 113.2 | 39.4 | |
| SD | 0.4 | 0.5 | 0.3 | 447.5 | 165.1 | 27.4 | 35.9 | |||
| Congo | 8 | Mean | 23.9 | 25.1 | 21.8 | 1559.8 | 657.2 | 13.0 | 428.6 | |
| SD | 0.9 | 0.7 | 1.3 | 85.7 | 53.5 | 13.5 | 55.1 | |||
| Overall | 71 | Mean | 24.1 | 25.1 | 22.8 | 1868.8 | 789.9 | 100.5 | 400.6 | |
| SD | 2.4 | 2.5 | 2.3 | 491.7 | 234.6 | 68.1 | 277.2 |
Abbreviation: DRC Democratic Republic of the Congo, SD standard deviation
Descriptive statistics of canopy height and tree canopy cover variables by species and country
| Species | Country |
| Statistic | Canopy height (m) | Tree cover (% canopy > 5 m) |
|---|---|---|---|---|---|
|
| Cameroon | 12 | Mean | 29.0 | 65.0 |
| SD | 5.4 | 13.3 | |||
| DRC | 14 | Mean | 20.7 | 72.3 | |
| SD | 10.7 | 19.2 | |||
| Equatorial Guinea | 3 | Mean | 26.0 | 56.2 | |
| SD | 5.0 | 18.1 | |||
| Nigeria | 10 | Mean | 17.3 | 34.0 | |
| SD | 9.8 | 21.4 | |||
| Congo | 8 | Mean | 21.1 | 74.3 | |
| SD | 6.2 | 21.3 | |||
| South Sudan | 1 | Mean | 15.7 | 51.9 | |
| SD | – | – | |||
| Overall | 48 | Mean | 22.4 | 61.4 | |
| SD | 9.1 | 23.3 | |||
|
| Cameroon | 12 | Mean | 28.0 | 62.3 |
| SD | 5.9 | 12.6 | |||
| DRC | 7 | Mean | 20.2 | 73.2 | |
| SD | 12.6 | 23.1 | |||
| Equatorial Guinea | 6 | Mean | 29.4 | 63.2 | |
| SD | 5.9 | 16.8 | |||
| Nigeria | 2 | Mean | 27.0 | 53.0 | |
| SD | 8.1 | 27.1 | |||
| Congo | 8 | Mean | 21.1 | 74.3 | |
| SD | 6.2 | 21.3 | |||
| Overall | 35 | Mean | 25.1 | 66.9 | |
| SD | 8.3 | 18.5 |
Abbreviation: DRC Democratic Republic of the Congo, SD standard deviation
Fig. 3MaxEnt model results plots. a, b Area under the curve (AUC) plots of both species models. Red line shows the mean of the 30 replicate MaxEnt runs and blue area the mean ± one standard deviation. c, d Jackknife test of regularized training gain. Dark blue columns show how would be the model gain using each variable in isolation. Light blue columns show how would change the model gain if the variable was excluded. The longest dark blue column turns to be the variable to have the most useful information by itself. The shortest light blue column appears to be the variable which has the most information that is not present in other variables
Permutation importance of the environmental variables in the MaxEnt model
| Variable | Permutation importance (%) | |
|---|---|---|
|
|
| |
| Annual mean temperature | 13.1 | 35 |
| Annual precipitation | 48.8 | 25.4 |
| Tree cover | 23.3 | 22.9 |
| Canopy height | 14.8 | 16.6 |
Note. Permutation importance depends only on the final MaxEnt model. The contribution for each variable is determined by randomly permuting the values of that variable among the training points (both presence and background) and measuring the resulting decrease in training AUC. Values are normalized to give percentages
Fig. 4Response curves of environmental variables in the two MaxEnt models for C. silacea (a, c, e, g) and C. dimidiata (b, d, f, h). The plots represent a MaxEnt model created using only the corresponding variable. The curves show the mean response of the 30 replicate MaxEnt runs (red line) and the mean ± one standard deviation (blue area)
Fig. 5Predicted distribution maps for C. silacea (a) and C. dimidiata (b) vectors obtained from MaxEnt model data. Probability of occurrence is depicted in the form of percentages