| Literature DB >> 30723321 |
Dominique P Germain1, Kathy Nicholls2, Roberto Giugliani3, Daniel G Bichet4, Derralynn A Hughes5, Laura M Barisoni6, Robert B Colvin7, J Charles Jennette8, Nina Skuban9, Jeffrey P Castelli9, Elfrida Benjamin9, Jay A Barth9, Christopher Viereck9.
Abstract
PURPOSE: Outcomes in patients with Fabry disease receiving migalastat during the phase 3 FACETS trial (NCT00925301) were evaluated by phenotype.Entities:
Keywords: Fabry disease; classic; migalastat; pharmacogenetics; precision medicine
Mesh:
Substances:
Year: 2019 PMID: 30723321 PMCID: PMC6752321 DOI: 10.1038/s41436-019-0451-z
Source DB: PubMed Journal: Genet Med ISSN: 1098-3600 Impact factor: 8.822
Effect of migalastat on α-Gal A activity by GLA variant[4]
| Measured in PBMC at baseline (month 0)a | Measured in HEK-293 cell lysate | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| α-Gal A mutant form | -Migalastat | -Migalastat | +Migalastat | Absolute increase at 10 µM (%WT) | α-Gal A activity at 10 µM (fold over baseline) | ||||
| Amino acid change | Nucleotide change | α-Gal A activity (nmol/mg/h) | % WT | α-Gal A activity (nmol/mg/h) | % WT | α-Gal A activity (nmol/mg/h) | % WT | ||
|
| |||||||||
| p.Asp55Val/ Gln57Leu | c.164 A>T; c.170 A>T | BLQ | 0.2 | 9913 | N/A | 2526 ± 287c | 8.0 ± 0.5 | 8.0 | NC |
| p.Gly144Val | c.431 G>T | 0.05 | 0.2 | 253 ± 21 | 0.8 ± 0.1 | 2924 ± 335c | 9.2 ± 1.2 | 8.4 | 11.58 |
| p.Cys174Arg | c.520 T>C | 0.28 | 1.3 | 4671 ± 270 | 14.3 ± 0.6 | 16,505 ± 393c | 51.6 ± 2.0 | 37.4 | 3.53 |
| p.Gly183Asp | c.548 G>A | 0.04 | 0.0 | 207 ± 15 | 0.7 ± 0.1 | 6074 ± 212c | 19.1 ± 1.0 | 18.4 | 29.31 |
| p.Tyr216Cys | c.647 A>G | BLQ | 0.0 | 673 ± 38 | 2.0 ± 0.1 | 7003 ± 305c | 20.7 ± 0.8 | 18.7 | 10.40 |
| p.Leu243Phe | c.729 G>C | 0.19 | 1.1 | 2694 ± 117 | 7.9 ± 0.3 | 14,370 ± 618c | 42.3 ± 1.4 | 34.4 | 5.33 |
| p.Ile253Thrc | c.758 T>C | 0.63/0.58 | 2.9/2.6 | 11,287 ± 506 | 38.9 ± 3.0 | 23,417 ± 1077c | 80.2 ± 5.9 | 41.3 | 2.07 |
| p.Pro259Argc | c.776 C>G | 0.44/0.6 | 3.3/3.1 | 6681 ± 364 | 23.3 ± 2.3 | 17,645 ± 515c | 60.3 ± 3.8 | 37.0 | 2.64 |
| p.Arg301Gln | c.902 G>A | 0.42 | 2.5 | 1914 ± 52 | 5.5 ± 0.2 | 15,547 ± 353c | 44.5 ± 1.0 | 39.0 | 8.12 |
| p.Asp322Glu | c.966 C>A | 0.2 | 0.9 | 2398 ± 141 | 6.7 ± 0.2 | 9554 ± 667c | 26.8 ± 1.3 | 20.0 | 3.98 |
| p.Gly325Arg | c.973 G>C | 0.07 | 0.3 | 909 ± 31 | 2.6 ± 0.1 | 9244 ± 417c | 26.6 ± 1.4 | 24.0 | 10.17 |
| p.Gly373Ser | c.1117 G>A | 0.29 | 0.8 | 1544 ± 69 | 4.8 ± 0.3 | 5128 ± 288c | 15.7 ± 0.8 | 10.9 | 3.32 |
|
| |||||||||
| p.Asp33Gly | c.98 A>G | 1.42 | 6.5 | 9913 ± 600 | 29.3 ± 1.8 | 24,033 ± 865c | 70.6 ± 2.4 | 41.3 | 2.42 |
| p.Ala156Thrd | c.466 G>A | NA | NA | 907 ± 31 | 2.8 ± 0.1 | 7034 ± 289c | 21.9 ± 0.9 | 19.1 | 7.75 |
| p.Asp244Asne | c.730 G>A | NA | NA | 10,317 ± 386 | 30.9 ± 1.6 | 16,321 ± 402c | 48.7 ± 1.7 | 17.8 | 1.58 |
| p.Arg356Trp | c.1066 C>T | 1.22 | 1.7 | 3526 ± 240 | 11.0 ± 0.7 | 15,570 ± 830c | 49.1 ± 2.6 | 38.1 | 4.42 |
|
| |||||||||
| p.Leu36Trp | c.107 T>G | — | — | 241 ± 19 | 0.7 ± 0.1 | 5182 ± 463c | 16.6 ± 2.1 | 15.9 | 21.49 |
| p.Gly85Asp | c.254 G>A | — | — | 888 ± 38 | 2.7 ± 0.1 | 4534 ± 135c | 14.3 ± 0.9 | 11.6 | 5.10 |
| p.Arg112His | c.335 G>A | — | — | 845 ± 39 | 2.6 ± 0.1 | 5583 ± 215c | 17.4 ± 0.8 | 14.8 | 6.61 |
| p.Met187Ile | c.561 G>A | — | — | 1775 ± 57 | 5.1 ± 0.2 | 10,824 ± 555c | 30.7 ± 1.1 | 25.6 | 6.10 |
| p.Pro205Thr | c.613 C>A | — | — | 4802 ± 230 | 14.4 ± 0.9 | 16,371 ± 647c | 48.8 ± 2.2 | 34.4 | 3.41 |
| p.Gly258Arg | c.772 G>C | — | — | 9558 ± 348 | 32.6 ± 2.1 | 22,630 ± 801c | 78.1 ± 5.8 | 45.5 | 2.37 |
| p.Leu300Pro | c.899 T>C | — | — | 1277 ± 38 | 3.7 ± 0.1 | 13,219 ± 412c | 37.9 ± 1.2 | 34.2 | 10.35 |
| p.Pro293Thr | c.877 C>A | — | — | 229 ± 20 | 0.7 ± 0.1 | 4488 ± 327c | 13.3 ± 1.1 | 12.7 | 19.60 |
| p.Phe 295Cys | c.884 T>G | — | — | 1196 ± 38 | 3.4 ± 0.1 | 5051 ± 190c | 14.5 ± 0.6 | 11.1 | 4.22 |
| p.Gly271Ser; Asp313Tyrf | c.811 G>A; c.937 G>T | — | — | BLQ | N/A | 877 ± 18c | 3.0 ± 0.2 | 3.0 | NC |
| p.Ile317Thr | c.950 T>C | — | — | 2298 ± 338 | 6.5 ± 0.6 | 7812 ± 530c | 23.6 ± 1.0 | 17.0 | 3.40 |
| p.Asp264Tyr | c.790 G>T | — | — | 143 ± 13 | 0.5 ± 0.0 | 1842 ± 100c | 6.2 ± 0.3 | 5.7 | 12.89 |
| p.Gly260Ala | c.779 G G>C | — | — | 2221 ± 142 | 7.5 ± 0.6 | 10,749 ± 403c | 37.4 ± 3.1 | 29.9 | 4.84 |
| p.Met284Thr | c.851 T>C | — | — | 606 ± 40 | 1.7 ± 0.1 | 5050 ± 268c | 14.3 ± 0.6 | 12.6 | 8.33 |
| p.Gly183Asp | c.548 G>A | — | — | 207 ± 15 | 0.7 ± 0.1 | 6074 ± 212c | 19.1 ± 1.0 | 18.4 | 29.31 |
| p.Arg301Gln | c.902 G>A | — | — | 1914 ± 52 | 5.5 ± 0.2 | 15,547 ± 353c | 44.5 ± 1.0 | 39.0 | 8.12 |
| p.Ile253Thr | c.758 T>C | — | — | 11,287 ± 506 | 38.9 ± 3.0 | 23,417 ± 1077c | 80.2 ± 5.9 | 41.3 | 2.07 |
| p.Asp322Glu | c.966 C>A | — | — | 2398 ± 141 | 6.7 ± 0.2 | 9554 ± 667c | 26.8 ± 1.3 | 20.0 | 3.98 |
| p.Ile270Thr | c.809 T>C | — | — | 1846 ± 119 | 6.3 ± 0.5 | 12,416 ± 377c | 42.8 ± 3.0 | 36.5 | 6.73 |
| p.Gly325Arg | c.973 G>C | — | — | 909 ± 31 | 2.6 ± 0.1 | 9244 ± 417c | 26.6 ± 1.4 | 24.0 | 10.17 |
| p.Tyr216Cys | c.647 A>G | — | — | 673 ± 38 | 2.0 ± 0.1 | 7003 ± 305c | 20.7 ± 0.8 | 18.7 | 10.40 |
| p.Pro259Arg | c.776 C>G | — | — | 6681 ± 364 | 23.3 ± 2.3 | 17,645 ± 515c | 60.3 ± 3.8 | 37.0 | 2.64 |
| p.Met284Thr | c.851 T>C | — | — | 606 ± 40 | 1.7 ± 0.1 | 5050 ± 268c | 14.3 ± 0.6 | 12.6 | 8.33 |
| p.Gly258Arg | c.772 G>C | — | — | 9558 ± 348 | 32.6 ± 2.1 | 22,630 ± 801c | 78.1 ± 5.8 | 45.5 | 2.37 |
α-Gal A α-galactosidase A, BLQ below the limit of quantification (<142 nmol/mg/h), NA not assessed, NC not calculable, PBMC peripheral blood mononuclear cells, WT wild-type.
This table lists the unique GLA variants occurring in the different patient subgroups, with some variants found in ≥1 patient; therefore, the numbers of variants do not necessarily reflect patient numbers. These data have been previously published by Benjamin et al.[4] Data on the variant relevant to the current paper have been collated from Table 1S (HEK-293) and Table 4S (PBMC) of the Supplementary Material from Benjamin et al. Data are expressed as the mean ± SEM of 20 data points: mutant α-Gal A activity is expressed as a percentage of the α-Gal A activity measured in WT cell lysates incubated without migalastat (-Migalastat) assayed in parallel. Absolute increase at 10 µM (%WT) = the percentage of wild-type α-Gal A activity with 10 µM migalastat ( + Migalastat) minus the baseline (-Migalastat) percentage of wild-type α-Gal A activity. BLQ indicates that the mean α-Gal A activity (mean of n = 20) was below the limit of quantification ( nmol/mg/h; value is equal to 3 c standard deviation of the pcDNA activity in nmol/mg/h after vector subtraction across 128 samples assayed in ten method validation experiments).
α-Gal A activity at 10 µM (fold over baseline) = α-Gal A activity in mutant-transfected cell lysate with 10 µM migalastat / α-Gal A activity in mutant-transfected cell lysate without migalastat. Statistically significant differences in α-Gal A activity without migalastat (n = 20) versus with 10 µM migalastat (n = 20) were determined using a one-tailed Mann–Whitney U nonparametric test:
aPBMC data are only shown for male patients.
bCriteria for the classic phenotype: male, PBMC α-Gal A activity <3% of normal, multiorgan disease.
cα-Gal A mutant forms that show a statistically significant increase in α-Gal A activity after incubation with 10 μM migalastat. P < 0.001.
dTwo male patients with the classic phenotype included in the FACETS trial had this variant.
eThe PBMC α-Gal A value at baseline from one male patient (p.A156T) was implausible because it was higher than any baseline value from all other male patients in the study (in fact, the baseline value is within the typical range of baseline values from female patients in AT1001-011), and it was higher than any one of this male’s other visits. Therefore, this patient was excluded from this analysis and is not represented in this table.
fThe PBMC α-Gal A value at baseline was missing for one male patient (p.D244N) treated with migalastat in stage 1 and stage 2. Therefore, this patient was excluded from this analysis and is not represented in this table.
gVariant not reported as Fabry disease–associated.
Baseline characteristics of male patients with the classic phenotype
| Male patients with the classic phenotype | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | |
| Variant (amino acid change) | p.I253T | p.I253T | p.C174R | p.G144V | p.D322E | p.G325R | p.Y216C | p.G183D | p.L243F | p.D55V; p.Q57L | p.R301Q | p.G373S | p.P259R | p.P259R |
|
| ||||||||||||||
| Age (years) | 62 | 61 | 27 | 35 | 60 | 16 | 34 | 35 | 45 | 25 | 56 | 48 | 45 | 45 |
| Weight (kg) | 74 | 58 | 92.7 | 66.5 | 97.07 | 64 | 90.5 | 70 | 67 | 100.6 | 77.6 | 111.2 | 101.8 | 62.7 |
| Time since Fabry diagnosis (years) | 4.6 | 0.3 | 2.6 | 13.4 | 2.4 | 0.4 | 6.2 | 23.9 | 9.1 | 2.6 | 0.6 | 0.5 | 9.9 | 8.9 |
| Previous use of ERT | Yes | No | No | No | No | No | Yes | Yes | Yes | No | No | No | Yes | Yes |
| Blood pressure (SBP/DBP, mm Hg) | 120/80 | NA | 120/70 | 110/63 | 136/84 | 130/70 | 130/90 | 125/62 | 117/63 | 137/96 | 122/94 | 119/66 | 140/80 | 110/70 |
| Urine protein (mg/24 hours) | 331 | 1900 | 1584 | 240 | 918 | 242 | 400 | 150 | 161 | 198 | 2351 | 602 | 335 | 1909 |
| eGFRCKD-EPI (mL/min/1.73 m2) | 86.78 | 53.79 | 44.12 | 104.9 | 41.36 | 151.35 | 119.22 | 109.68 | 102.24 | 98.08 | 55.71 | 64.55 | 105.36 | 86.34 |
| LVMi (g/m2) | 176.18 | 142.78 | 77.36 | 114.93 | 140.79 | 77.86 | 102.06 | 101.77 | 105.02 | 83.42 | 137.47 | 121.68 | 115.86 | 105.77 |
| Urine GL-3 (ng/mg creatinine) | 1975 | 4063.6 | 1090 | 2176.2 | 4163.6 | 2119.2 | 3418.9 | 641.4 | 4196.6 | 750.9 | 1002.4 | 847.6 | 2548.6 | 5245.9 |
| Plasma lyso-Gb3 (nmol/L) | NA | NA | NA | 119.7 | 81.7 | NA | 128 | NA | 109 | 92.2 | NA | NA | 113.3 | 53.3 |
| GSRS-D | 1 | 1 | 1 | 4 | 2 | 4.7 | 1.3 | 1 | 1 | 2.7 | 1 | 3.3 | 4 | 6 |
| WBC α-Gal A activity (4 MU/h/mg) | 0.63 | 0.58 | 0.28 | 0.05 | 0.2 | 0.07 | BLQ | 0.04 | 0.19 | BLQ | 0.42 | 0.29 | 0.6 | 0.44 |
| Use of ACEI/ARB/RI | Yes | No | Yes | No | No | No | No | Yes | Yes | No | Yes | Yes | No | No |
|
| ||||||||||||||
| Acroparesthesia | No | No | No | Yes | No | No | No | Yes | Yes | No | No | No | No | No |
| Angiokeratoma | No | No | No | No | Yes | No | Yes | Yes | Yes | Yes | No | Yes | Yes | Yes |
| Cornea verticillata | No | No | No | No | No | No | No | No | Yes | No | No | No | No | No |
| Cardiac eventb | Yes | No | Yes | Yes | Yes | No | No | Yes | Yes | Yes | Yes | Yes | Yes | Yes |
| TIA/stroke event | Yes | No | No | No | Yes | No | No | No | No | No | No | No | No | Yes |
| Hearing loss | Yes | No | No | Yes | Yes | No | No | Yes | Yes | No | No | No | No | Yes |
| Hypertension | No | No | Yes | No | Yes | No | No | No | No | No | No | Yes | No | No |
| Hypohidrosis | No | No | No | Yes | No | Yes | Yes | Yes | No | Yes | No | No | No | No |
| GI symptomsc | No | No | Yes | Yes | Yes | Yes | Yes | No | No | Yes | Yes | Yes | No | Yes |
ACEI angiotensin-converting-enzyme inhibitor, ARB angiotensin II receptor blocker, BLQ below the limit of quantification, DBP diastolic blood pressure, eGFRCKD-EP estimated glomerular filtration rate using the Chronic Kidney Disease Epidemiology Collaboration equation, ERT enzyme replacement therapy, GI gastrointestinal, GSRS-D Gastrointestinal Symptom Rating Scale diarrhea domain, LVMi left ventricular mass index, NA not assessed, RI renin inhibitor, SBP systolic blood pressure, TIA transient ischemic attack, WBC white blood cell.
a“Yes” indicates reported and “No” indicates not reported. However, medical history may not have been completely reported; therefore, “No” does not necessarily indicate absence of the complication.
bCardiac events include left ventricular hypertrophy, heart failure, heart valve regurgitation, myocardial infarction, bradycardia, right bundle branch block, atrial fibrillation, and tachycardia.
cGI symptoms include diarrhea, nausea, vomiting, gastroesophageal reflux disease, and abdominal pain/distension.
Fig. 1Measurements of disease severity and treatment effect in the classic phenotype and other patient subgroups. (a) Mean annualized rate of change in estimated glomerular filtration rate (eGFR) and measured glomerular filtration rate (mGFR) from baseline to month 24. (b) Mean change in LVMi from baseline to month 24. (c) Mean change in GSRS-D from baseline to month 24. (d) Mean change from baseline to month 12 in average number of GL-3 inclusions per peritubular capillary. Within each subgroup, patients are grouped according to treatment allocation (migalastat to migalastat or placebo to migalastat). (e) Mean change from baseline to month 24 in plasma lyso-Gb3. aGroup is comprised of patients who switched from placebo to migalastat at month 6. bData are mean (SD) number of GL-3 inclusions per peritubular capillary at month 6 (i.e., after 6 months of placebo treatment). The upper cutoff value for normal plasma lyso-Gb3 level is 2.4 nmol/L.[38] eGFR estimated glomerular filtration rate using the Chronic Kidney Disease Epidemiology Collaboration equation, GL-3 globotriaosylceramide, GSRS-D Gastrointestinal Symptoms Rating Scale diarrhea subscale, LVMi left ventricular mass index, lyso-Gb plasma globotriaosylsphingosine, mGFR glomerular filtration rate measured using iohexol clearance.
Fig. 2Comparisons of published data for male patients with Fabry disease.
Annualized changes in (a) renal function and (b) LVMi as reported in the literature for male patients who are either untreated or have been treated with migalastat or ERT. aChange from baseline calculated using the weighted average for end-stage renal disease subgroups (n = 128 males with non-end-stage renal disease and n = 17 males with end-stage renal disease). eGFR estimated glomerular filtration rate, ERT enzyme replacement therapy, LVMi left ventricular mass index.