Literature DB >> 30721623

Enthalpy-Entropy Interplay in π-Stacking Interaction of Benzene Dimer in Water.

Hankyul Lee1, François Dehez2,3, Christophe Chipot2,3,4, Hyung-Kyu Lim5, Hyungjun Kim1.   

Abstract

Aromatic groups can engage in an interesting class of noncovalent interactions termed π-π interactions, which play a pivotal role in stabilizing a variety of molecular architectures, including nucleic acids, proteins, and supramolecular assemblies. When the aromatic compounds interact with each other in an aqueous environment, their association is facilitated by the hydrophobic effect-the trend of nonpolar solutes to aggregate in a polar solution. To develop an in-depth understanding of hydrophobic association, we investigate in the present work π-π interactions in water, employing as a paradigm the benzene dimer. Using DFT-CES, a mean-field QM/MM method recently developed by our group, we describe the benzene solute at a quantum-mechanical level. Full consideration of detailed solute-electron density enables an optimal description of the solute-solvent interactions, leading to an accurate prediction of hydration free energies. In π-stacking of benzene, we find an entropic stabilization associated with the shrinkage of the solvent-excluded volume, which agrees with the theory of hydrophobic effect at subnanoscales. However, at the equilibrium binding distance of the benzene dimer, we find that the entropic stabilization nearly cancels out due to the enthalpic cost required for dewetting the internal space. Such an enthalpy-entropy compensation leads the association free energy to be predominantly dictated by the solute-solute interaction enthalpy. The present work offers new insight into the mechanistic role of water and the primary thermodynamic driving force of hydrophobic association.

Entities:  

Year:  2019        PMID: 30721623     DOI: 10.1021/acs.jctc.8b00880

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  5 in total

Review 1.  Molecular photoswitches in aqueous environments.

Authors:  Jana Volarić; Wiktor Szymanski; Nadja A Simeth; Ben L Feringa
Journal:  Chem Soc Rev       Date:  2021-11-15       Impact factor: 54.564

2.  Structure, Dynamics, and Wettability of Water at Metal Interfaces.

Authors:  Suji Gim; Kang Jin Cho; Hyung-Kyu Lim; Hyungjun Kim
Journal:  Sci Rep       Date:  2019-10-15       Impact factor: 4.379

3.  Hydration of Aromatic Heterocycles as an Adversary of π-Stacking.

Authors:  Johannes R Loeffler; Michael Schauperl; Klaus R Liedl
Journal:  J Chem Inf Model       Date:  2019-10-17       Impact factor: 6.162

4.  Conformational Shifts of Stacked Heteroaromatics: Vacuum vs. Water Studied by Machine Learning.

Authors:  Johannes R Loeffler; Monica L Fernández-Quintero; Franz Waibl; Patrick K Quoika; Florian Hofer; Michael Schauperl; Klaus R Liedl
Journal:  Front Chem       Date:  2021-03-26       Impact factor: 5.221

5.  Thermodynamics of π-π Interactions of Benzene and Phenol in Water.

Authors:  Dooam Paik; Hankyul Lee; Hyungjun Kim; Jeong-Mo Choi
Journal:  Int J Mol Sci       Date:  2022-08-29       Impact factor: 6.208

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.