| Literature DB >> 30720456 |
Taraneh Hajiashrafi1, Roghayeh Zekriazadeh1, Keith J Flanagan2, Farnoush Kia1, Antonio Bauzá3, Antonio Frontera3, Mathias O Senge2.
Abstract
The supramolecular chemistry of coordination compounds has become an important research domain of modern inorganic chemistry. Herein, six isostructural group IIB coordination compounds containing a 2-{[(2-methoxyphenyl)imino]methyl}phenol ligand, namely dichloridobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)zinc(II), [ZnCl2(C28H26N2O4)], 1, diiodidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)zinc(II), [ZnI2(C28H26N2O4)], 2, dibromidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)cadmium(II), [CdBr2(C28H26N2O4)], 3, diiodidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)cadmium(II), [CdI2(C28H26N2O4)], 4, dichloridobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)mercury(II), [HgCl2(C28H26N2O4)], 5, and diiodidobis(2-{(E)-[(2-methoxyphenyl)azaniumylidene]methyl}phenolato-κO)mercury(II), [HgI2(C28H26N2O4)], 6, were synthesized and characterized by X-ray crystallography and spectroscopic techniques. All six compounds exhibit an infinite one-dimensional ladder in the solid state governed by the formation of hydrogen-bonding and π-π stacking interactions. The crystal structures of these compounds were studied using geometrical and Hirshfeld surface analyses. They have also been studied using M06-2X/def2-TZVP calculations and Bader's theory of `atoms in molecules'. The energies associated with the interactions, including the contribution of the different forces, have been evaluated. In general, the π-π stacking interactions are stronger than those reported for conventional π-π complexes, which is attributed to the influence of the metal coordination, which is stronger for Zn than either Cd or Hg. The results reported herein might be useful for understanding the solid-state architecture of metal-containing materials that contain MIIX2 subunits and aromatic organic ligands. open access.Entities:
Keywords: coordination compound; crystal structure; group IIB; hydrogen bonding; metallosupramolecular assembly; noncolvalent interactions; π-stacking
Year: 2019 PMID: 30720456 PMCID: PMC6363043 DOI: 10.1107/S2053229618018314
Source DB: PubMed Journal: Acta Crystallogr C Struct Chem ISSN: 2053-2296 Impact factor: 1.172
Figure 1(a)–(f) The molecular structures of compounds 1–6, respectively, showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Selected bond lengths (Å) and angles (°) for compounds 1–6
| Compound |
|
|
|
|
|
| |
|---|---|---|---|---|---|---|---|
| Bond lengths |
| 2.240 (4) | 2.588 (3) | 2.537 (1) | 2.720 (1) | 2.371 (1) | 2.658 (1) |
|
| 2.243 (4) | 2.568 (3) | 2.545 (1) | 2.710 (1) | 2.369 (1) | 2.654 (1) | |
|
| 1.985 (1) | 1.990 (10) | 2.216 (4) | 2.231 (2) | 2.259 (2) | 2.387 (5) | |
|
| 1.983 (1) | 1.990 (10) | 2.225 (4) | 2.216 (2) | 2.356 (2) | 2.378 (5) | |
| Bond angles |
| 124.8 (2) | 123.7 (1) | 130.0 (1) | 130.1 (1) | 148.2 (1) | 145.1 (1) |
| O1 | 103.9 (3) | 104.0 (4) | 104.4 (1) | 103.7 (1) | 98.3 (1) | 102.0 (1) | |
| O1 | 104.0 (3) | 103.6 (4) | 103.6 (1) | 104.8 (1) | 100.4 (1) | 98.7 (1) | |
| O1 | 105.5 (3) | 106.2 (4) | 104.8 (1) | 102.9 (1) | 98.8 (1) | 98.6 (1) | |
| O1 | 102.8 (3) | 104.2 (4) | 101.9 (1) | 103.5 (1) | 100.7 (1) | 102.3 (1) | |
| O1 | 116.8 (4) | 115.8 (5) | 112.0 (2) | 111.6 (1) | 105.6 (1) | 105.8 (2) |
Figure 2Representation of the self-assembly of compounds 1–6, showing the association of discrete units through π–π stacking interactions in the crystallographic a direction and C—H⋯X (X = Cl, Br and I) hydrogen bonding in the bc plane.
Figure 3Relative contributions of the various noncovalent contacts to the Hirshfeld surface area in complexes 1–6.
Figure 4Partial view of the X-ray crystal structures in compounds (a) 1 (Zn), (b) 3 (Cd) and (c) 5 (Hg).
Figure 5MEP surface of compound 1. The MEP values at selected points are given in kcal mol−1.
Figure 6(a) Interaction energies of the self-assembled π-stacked dimers observed in the solid state of compounds 1 and 2. (b)/(c) Interaction energies in several theoretical models of 1 and 2. (d) On-top representation of the π-stacking interaction. All distances are in Å.
Figure 7(a) Interaction energies of the self-assembled π-stacked dimers observed in the solid state of compounds 3 and 4. (b)/(c) Interaction energies in several theoretical models of 3 and 4. All distances are in Å.
Figure 8(a) Interaction energies of the self-assembled π-stacked dimers observed in the solid state of compounds 5 and 6. (b)/(c) Interaction energies in several theoretical models of 5 and 6. All distances are in Å.
Figure 9AIM analysis of the self-assembled dimers retrieved from the X-ray structure of compound 3. Bond, ring and cage critical points are represented by red, yellow and green spheres, respectively. The bond paths connecting bond critical points are also represented by dashed lines.
|
|
|
| |
|---|---|---|---|
| Crystal data | |||
| Chemical formula | [ZnCl2(C28H26N2O4)] | [ZnI2(C28H26N2O4)] | [CdBr2(C28H26N2O4)] |
|
| 590.78 | 773.68 | 726.73 |
| Crystal system, space group | Triclinic, | Triclinic, | Triclinic, |
| Temperature (K) | 100 | 100 | 100 |
|
| 9.1926 (2), 10.6101 (2), 14.8057 (3) | 9.2709 (19), 10.020 (2), 16.248 (4) | 9.2772 (3), 10.0935 (3), 16.1021 (5) |
| α, β, γ (°) | 94.188 (1), 97.716 (1), 114.409 (1) | 98.56 (4), 100.50 (4), 110.09 (3) | 97.699 (2), 100.586 (2), 111.149 (2) |
|
| 1289.80 (5) | 1356.7 (6) | 1348.92 (8) |
|
| 2 | 2 | 2 |
| Radiation type | Mo | Mo | Mo |
| μ (mm−1) | 1.20 | 3.22 | 3.81 |
| Crystal size (mm) | 0.26 × 0.12 × 0.11 | 0.14 × 0.07 × 0.03 | 0.27 × 0.13 × 0.10 |
| Data collection | |||
| Diffractometer | Bruker SMART APEXII area detector | Bruker APEXII area detector | Bruker APEXII area detector |
| Absorption correction | Multi-scan ( | Multi-scan ( | Multi-scan ( |
|
| 0.691, 0.747 | 0.612, 0.746 | 0.538, 0.745 |
| No. of measured, independent and observed [ | 93163, 11965, 9331 | 7281, 7281, 4608 | 10130, 10130, 8342 |
|
| 0.053 | 0.116 | 0.020 |
| (sin θ/λ)max (Å−1) | 0.822 | 0.606 | 0.634 |
| Refinement | |||
|
| 0.035, 0.084, 1.02 | 0.067, 0.195, 0.99 | 0.040, 0.126, 1.03 |
| No. of reflections | 11965 | 7281 | 10130 |
| No. of parameters | 336 | 337 | 337 |
| No. of restraints | 0 | 174 | 0 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.77, −0.71 | 2.19, −1.18 | 1.04, −0.70 |
|
|
|
| |
|---|---|---|---|
| Crystal data | |||
| Chemical formula | [CdI2(C28H26N2O4)] | [HgCl2(C28H26N2O4)] | [HgI2(C28H26N2O4)] |
|
| 820.71 | 726.00 | 908.90 |
| Crystal system, space group | Triclinic, | Triclinic, | Triclinic, |
| Temperature (K) | 100 | 100 | 100 |
|
| 9.3200 (3), 10.0498 (3), 16.6239 (5) | 9.2456 (4), 10.1510 (4), 15.8499 (6) | 9.2783 (14), 10.0060 (15), 16.695 (3) |
| α, β, γ (°) | 99.140 (1), 100.528 (1), 109.332 (1) | 96.5447 (15), 99.7441 (15), 112.6735 (14) | 98.777 (1), 100.296 (1), 109.396 (1) |
|
| 1403.58 (8) | 1326.25 (9) | 1400.4 (4) |
|
| 2 | 2 | 2 |
| Radiation type | Mo | Mo | Mo |
| μ (mm−1) | 3.01 | 6.04 | 7.74 |
| Crystal size (mm) | 0.40 × 0.26 × 0.14 | 0.17 × 0.14 × 0.08 | 0.38 × 0.19 × 0.13 |
| Data collection | |||
| Diffractometer | Bruker SMART APEXII area detector | Bruker APEXII area detector | Bruker APEXII area detector |
| Absorption correction | Numerical ( | Multi-scan ( | Multi-scan ( |
|
| 0.416, 0.667 | 0.630, 0.746 | 0.441, 0.746 |
| No. of measured, independent and observed [ | 110757, 13807, 10917 | 22779, 22779, 21098 | 11185, 11185, 10132 |
|
| 0.055 | 0.012 | 0.071 |
| (sin θ/λ)max (Å−1) | 0.838 | 0.668 | 0.650 |
| Refinement | |||
|
| 0.033, 0.067, 1.03 | 0.022, 0.052, 1.03 | 0.032, 0.112, 1.08 |
| No. of reflections | 13807 | 22779 | 11185 |
| No. of parameters | 336 | 337 | 337 |
| No. of restraints | 0 | 0 | 0 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 1.04, −1.33 | 1.29, −0.60 | 1.48, −1.78 |
Computer programs: APEX3 (Bruker, 2016 ▸), SAINT (Bruker, 2015 ▸), SHELXT (Sheldrick, 2015b ▸), SHELXL2014 (Sheldrick, 2015a ▸) and OLEX2 (Dolomanov et al., 2009 ▸).