| Literature DB >> 30719180 |
Xi Wang1,2, Yujie Ning1, Pan Zhang1, Lei Yang1,3, Cheng Li1,4, Rong Zhou1,4, Xiong Guo1.
Abstract
Clinical variables contribute to the severity of Kashin-Beck disease (KBD). However, it is unclear if there is a correlation between gene expression and clinical variables. Peripheral blood samples were collected from 100 patients with KBD and 100 healthy controls from KBD-endemic areas to identify differentially expressed genes in KBD. Correlation analysis and multiple logistic regression analysis were performed using gene expression and clinical parameters. Immunohistochemistry (IHC) was used to detect the expression of related proteins in articular cartilage tissues. Thirty-nine differentially expressed genes were identified in patients with KBD. Nine differentially expressed genes were correlated with the metacarpal length/metacarpal breadth index. FZD1 was identified as having statistical significance in establishing the regression model of clinical parameters and gene expression. FZD1 expression levels were remarkably reduced in patients with KBD. Our results indicate that FZD1 could be involved in the pathological process of phalanges tuberositas and brachydactylia and may provide new insight into the pathogenesis of articular cartilage destruction observed in patients with KBD.Entities:
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Year: 2019 PMID: 30719180 PMCID: PMC6335718 DOI: 10.1155/2019/3736198
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Cartilage tissue and chondrocyte from the patients with KBD and control. Cartilage tissue collection and chondrocyte culture.
| Sample pair | KBD | Normal | ||
|---|---|---|---|---|
| Age (years) | Gender | Age (years) | Gender | |
| 1 | 61 | Female | 60 | Female |
| 2 | 62 | Female | 63 | Female |
| 3 | 59 | Male | 58 | Male |
| 4 | 56 | Female | 52 | Female |
| 5 | 54 | Male | 55 | Male |
| Mean | 58.4 | 57.6 | ||
Univariate analysis of categorical variables in clinical parameters and general information between KBD grades I and II.
| Variables | Grade I | Grade II |
|
| OR | ||
|---|---|---|---|---|---|---|---|
| + | − | + | − | ||||
| Phalanges tuberositas | 23 | 7 | 47 | 3 | 3.688 | 0.055 | 4.768 (1.13 ± 20.15) |
| Brachydactylia | 3 | 27 | 49 | 1 | 63.82 | 0.0001 | 441.0 (43.7 ± 4449) |
| Deformity of elbow | 23 | 7 | 47 | 3 | 3.688 | 0.055 | 4.768 (1.13 ± 20.15) |
| Deformity of knee | 11 | 19 | 35 | 15 | 8.525 | 0.004 | 4.030 (1.54 ± 10.50) |
| Dyskinesia in joints of wrist | 22 | 8 | 46 | 4 | 3.765 | 0.052 | 4.182 (1.13 ± 15.39) |
| Dyskinesia in joints of elbow | 24 | 6 | 49 | 1 | 5.521 | 0.019 | 12.25 (1.39 ± 107.5) |
| Dyskinesia in joints of shoulder | 1 | 29 | 11 | 39 | 3.765 | 0.052 | 8.179 (0.99 ± 66.98) |
| Dyskinesia in joints of knee | 11 | 19 | 40 | 10 | 15.23 | 0.0001 | 6.909 (2.50 ± 19.07) |
| Dyskinesia in joints of ankle | 26 | 4 | 48 | 2 | 1.201 | 0.273 | 3.692 (0.63 ± 21.53) |
| Fracture | 2 | 28 | 6 | 44 | 0.148 | 0.700 | 1.909 (0.36 ± 10.13) |
| Blurred vision | 18 | 12 | 41 | 9 | 4.688 | 0.030 | 3.037 (1.08 ± 8.479) |
| Hearing disorder | 13 | 17 | 19 | 31 | 0.222 | 0.637 | 0.081 (0.32 ± 2.012) |
| Diarrhea | 7 | 23 | 4 | 46 | 3.717 | 0.054 | 0.286 (0.07 ± 1.077) |
| Astriction | 2 | 28 | 0 | 50 | — | 0.138 | 0.933 (0.84 ± 1.027) |
| Senile wart | 7 | 23 | 10 | 40 | 0.124 | 0.724 | 0.821 (0.27 ± 2.452) |
| Decayed tooth | 28 | 2 | 39 | 11 | 2.210 | 0.137 | 0.253 (0.05 ± 1.233) |
| Smoke | 8 | 22 | 12 | 38 | 0.071 | 0.790 | 0.868 (0.31 ± 2.450) |
| Alcohol consumption | 0 | 30 | 4 | 46 | — | 0.291 | 1.087 (1.01 ± 1.180) |
| Patients with KBD in other family members | 10 | 20 | 34 | 16 | 9.104 | 0.003 | 4.250 (1.62 ± 11.14) |
OR: odds ratios.
Univariate analysis (Mann-Whitney U test) of continuous variables in clinical parameters and general information between patients with KBD grades I and II.
| Variables | Total | Grade I | Grade II |
|
|
|---|---|---|---|---|---|
|
|
| ||||
| Age | 57.0 ± 7.3 | 55.3 ± 9.2 | 58.0 ± 5.7 | −2.120 | 0.034 |
| BMI index | 21.7 ± 2.6 | 21.7 ± 2.1 | 21.5 ± 2.8 | −0.924 | 0.355 |
| Metacarpal length | 16.2 ± 1.2 | 16.7 ± 1.2 | 15.8 ± 1.1 | −3.496 | 0.000 |
| Metacarpal breadth | 8.14 ± 0.5 | 8.01 ± 0.6 | 8.22 ± 0.5 | −1.489 | 0.137 |
List of 39 differentially expressed genes in KBD patients.
| Gene name | Symbol | Public ID | Fold changea |
|---|---|---|---|
|
| |||
| ATP-binding cassette, subfamily C, member 13, pseudogene | ABCC13 | NR_003087 | 0.42 ± 0.03 |
| ABI family, member 3 (NESH) binding protein | ABI3BP | NM_015429 | 0.33 ± 0.03 |
| Acyl-CoA synthetase long-chain family member 6 | ACSL6 | NM_001009185 | 0.31 ± 0.01 |
| Anaphase promoting complex subunit 1 | ANAPC1 | XM_006712690 | 0.33 ± 0.02 |
| Branched chain amino-acid transaminase 1, cytosolic | BCAT1 | NM_001178091 | 0.43 ± 0.04 |
| Chromosome 1 open reading frame 64 | C1orf64 | NM_178840 | 0.43 ± 0.03 |
| Calcium channel, voltage-dependent, gamma subunit 6 | CACNG6 | NM_145814 | 0.39 ± 0.02 |
| Chondroitin sulfate N-acetylgalactosaminyltransferase 1 | CSGALNACT1 | NM_001130518 | 0.45 ± 0.03 |
| Cathepsin C | CTSC | NM_001114173 | 0.39 ± 0.02 |
| Cytochrome b5 reductase 3 | CYB5R3 | NM_000398 | 0.48 ± 0.04 |
| Dystrophin, muscular dystrophy | DMD | NM_007868 | 0.37 ± 0.02 |
| Enhancer of rudimentary homolog (Drosophila) | ERH | NM_004450 | 0.38 ± 0.02 |
| F11 receptor | F11R | NM_016946 | 0.46 ± 0.02 |
| Fibrillin 1 | FKBP9 | NM_007270 | 0.49 ± 0.06 |
| Frizzled family receptor 1 | FZD1 | NM_003505 | 0.47 ± 0.03 |
| Growth differentiation factor 5 | GDF5 | NM_000557 | 0.44 ± 0.03 |
| Glutaredoxin 5 | GLRX5 | NM_016417 | 0.46 ± 0.04 |
| Hemoglobin, alpha 2 | HBA2 | NM_000517 | 0.49 ± 0.03 |
| Mitochondrial carrier triple repeat 3 pseudogene | MCART3P | NR_026540 | 0.43 ± 0.03 |
| STE20-related kinase adaptor beta | STRADB | NM_001206864 | 0.43 ± 0.03 |
| Zic family member 5 | ZIC5 | NM_033132 | 0.36 ± 0.02 |
|
| |||
| Aquaporin 1 | ATR | NM_001184 | 2.84 ± 0.27 |
| Baculoviral IAP repeat-containing 3 | BIRC3 | NM_001165 | 4.26 ± 0.35 |
| Collagen, type I, alpha 1 | COL1A1 | NM_000088 | 2.44 ± 0.44 |
| CD3g molecule, gamma (CD3-TCR complex) | CD3G | NM_000073 | 3.06 ± 0.25 |
| EYA transcriptional coactivator and phosphatase 4 | EYA4 | NM_001301012 | 3.77 ± 0.53 |
| Fem-1 homolog a ( | FEM1A | NM_018708 | 2.68 ± 0.49 |
| F-box protein 15 | FBXO15 | NM_001142958 | 2.59 ± 0.18 |
| FGFR1 oncogene partner 2 | FGFR1OP2 | NM_001171887 | 3.19 ± 0.24 |
| Small subunit (SSU) processed component, homolog | KRR1 | NM_007043 | 2.25 ± 0.19 |
| Optineurin | OPTN | NM_001008211 | 2.01 ± 0.14 |
| Phosphodiesterase 8B | PDE8B | XM_005248623 | 2.79 ± 0.16 |
| Required for meiotic nuclear division 5 homolog A | RMND5A | NM_0022780 | 2.90 ± 0.43 |
| Sialic acid binding Ig-like lectin 8 | SIGLEC8 | NM_014442 | 2.49 ± 0.29 |
| Solute carrier family 14 (urea transporter), member 1 | SLC14A1 | NM_001128588 | 2.47 ± 0.22 |
| Spermatogenesis associated 22 | SPATA22 | NM_001170695 | 2.06 ± 0.21 |
| Single-stranded DNA binding protein 1, mitochondrial | SSBP1 | NM_001256510 | 3.12 ± 0.25 |
| Tumor necrosis factor (ligand) superfamily, member 11 | TNFSF11 | NM_003701 | 3.30 ± 0.53 |
| Tetratricopeptide repeat domain 25 | TTC25 | NM_031421 | 2.52 ± 0.15 |
Differential expression genes between the KBD patients vs. controls were assessed using the selection criteria described in the Materials and Methods. According to the fold change value, only those genes showing significant differences (P value < 0.05) in expression, screening for the differential expression genes in KBD, are listed. aFold change, the mean and standard error of the mean (SEM) of the fold change in the expression of each gene.
Correlation analysis between gene expression and metacarpal length/metacarpal breadth index.
| Gene name |
|
|
|---|---|---|
| ATR | 0.401 | 0.001 |
| CSGALNACT | −0.457 | 0.001 |
| CTSC | −0.504 | 0.001 |
| COL1A1 | −0.424 | 0.001 |
| FZD1 | −0.497 | 0.001 |
| GDF5 | −0.537 | 0.001 |
| SLC14A1 | 0.464 | 0.001 |
| SSBP1 | 0.270 | 0.027 |
| TNFSF11 | 0.564 | 0.008 |
Differential expression rate of nine differentially expressed genes in patients with KBD grades I and II.
| Gene | Grade I | Grade II |
|
| OR | ||
|---|---|---|---|---|---|---|---|
| + | − | + | − | ||||
| ATR | 3 | 27 | 33 | 17 | 23.76 | 0.001 | 17.4 (4.62 ± 65.96) |
| CSGALNACT | 8 | 22 | 48 | 2 | 42.92 | 0.001 | 66.0 (12.93 ± 336.71) |
| CTSC | 8 | 22 | 49 | 1 | 46.57 | 0.001 | 134.7 (15.87 ± 1143.71) |
| COL1A1 | 9 | 21 | 48 | 2 | 39.87 | 0.001 | 56.0 (11.13 ± 281.76) |
| FZD1 | 9 | 21 | 49 | 1 | 43.48 | 0.001 | 114.3 (13.61 ± 960.45) |
| GDF5 | 9 | 21 | 49 | 1 | 43.48 | 0.001 | 114.3 (13.61 ± 960.45) |
| SLC14A1 | 1 | 29 | 33 | 17 | 30.13 | 0.001 | 56.2 (7.05 ± 449.51) |
| SSBP1 | 9 | 21 | 48 | 2 | 39.87 | 0.001 | 56.0 (11.13 ± 281.76) |
| TNFSF11 | 1 | 29 | 32 | 18 | 28.47 | 0.001 | 51.5 (6.47 ± 410.79) |
OR: odds ratios.
Univariate analysis between nine differentially expressed genes and phalanges tuberositas.
| Gene | Phalanges tuberositas |
|
| OR | ||
|---|---|---|---|---|---|---|
| + | − | |||||
| ATR | + | 35 | 1 | 5.65 | 0.041 | 9.0 (1.08 ± 74.86) |
| − | 35 | 9 | ||||
| CSGALNACT | + | 18 | 0 | 3.31 | 0.157 | — |
| − | 52 | 10 | ||||
| COL1A1 | + | 54 | 2 | 13.61 | 0.001 | 13.5 (2.61 ± 70.04) |
| − | 16 | 8 | ||||
| CTSC | + | 55 | 2 | 14.65 | 0.001 | 14.6 (2.81 ± 76.47) |
| − | 15 | 8 | ||||
| FZD1 | + | 56 | 2 | 15.79 | 0.001 | 16.0 (3.05 ± 83.85) |
| − | 14 | 8 | ||||
| GDF5 | + | 56 | 2 | 15.79 | 0.001 | 16.0 (3.05 ± 83.85) |
| − | 14 | 8 | ||||
| SLC14A1 | + | 51 | 3 | 2.36 | 0.231 | 3.3 (0.66 ± 17.00) |
| − | 19 | 7 | ||||
| TNFSF11 | + | 32 | 2 | 11.29 | 0.003 | 9.3 (2.13 ± 40.75) |
| − | 38 | 8 | ||||
| SSBP1 | + | 31 | 2 | 2.13 | 0.144 | 3.2 (0.62 ± 16.06) |
| − | 39 | 8 | ||||
OR: odds ratios.
Univariate analysis between nine differentially expressed genes and brachydactylia.
| Gene | Brachydactylia |
|
| OR | ||
|---|---|---|---|---|---|---|
| + | − | |||||
| ATR | + | 33 | 3 | 20.46 | 0.001 | 14.4 (3.85 ± 54.39) |
| − | 19 | 25 | ||||
| COL1A | + | 12 | 6 | 0.028 | 0.866 | 1.1 (0.36 ± 3.33) |
| − | 40 | 22 | ||||
| CSGALNACT | + | 49 | 7 | 41.53 | 0.001 | 49.0 (11.54 ± 208.03) |
| − | 3 | 21 | ||||
| CTSC | + | 50 | 7 | 44.98 | 0.001 | 75.0 (14.37 ± 391.32) |
| − | 2 | 21 | ||||
| FZD1 | + | 50 | 8 | 41.69 | 0.001 | 62.5 (12.19 ± 320.25) |
| − | 2 | 20 | ||||
| GDF5 | + | 50 | 8 | 41.69 | 0.001 | 62.5 (12.19 ± 320.25) |
| − | 2 | 20 | ||||
| SLC14A1 | + | 32 | 2 | 22.03 | 0.001 | 20.8 (4.44 ± 97.31) |
| − | 20 | 26 | ||||
| SSBP1 | + | 50 | 9 | 38.52 | 0.001 | 52.7 (10.43 ± 266.86) |
| − | 2 | 19 | ||||
| TNFSF11 | + | 31 | 2 | 20.67 | 0.001 | 19.1 (4.11 ± 89.62) |
| − | 21 | 26 | ||||
OR: odds ratios.
Multiple logistic regression analysis in phalanges tuberositas and differentially expressed genes.
| Gene |
| S.E. | Sig | OR |
|---|---|---|---|---|
| ATR | −1.41 | 2.30 | 0.539 | 2.916 |
| COL1A1 | −0.59 | 6.99 | 0.268 | 0.83 |
| CTSC | 1.48 | 9.83 | 0.956 | 2.13 |
| FZD1 | 3.95 | 2.11 | 0.036 | 11.54 |
| GDF5 | 3.62 | 5.23 | 0.064 | 0.22 |
| TNFSF11 | −3.44 | 1.94 | 0.035 | 12.15 |
S.E.: standard error; OR: odds ratios.
Multiple logistic regression analysis in brachydactylia and differentially expressed genes.
| Gene |
| S.E. | Sig | OR |
|---|---|---|---|---|
| ATR | 0.99 | 1.05 | 0.753 | 0.51 |
| CSGALNACT | 0.56 | 2.93 | 0.453 | 0.02 |
| CTSC | 1.61 | 0.91 | 0.211 | 3.64 |
| FZD1 | 2.44 | 0.991 | 0.014 | 11.54 |
| GDF5 | −16.03 | 7.41 | 0.803 | 0.22 |
| SLC14A1 | 0.027 | 0.68 | 0.869 | 0.74 |
| SSBP1 | 0.99 | 0.714 | 0.319 | 1.88 |
| TNFSF11 | 0.62 | 0.99 | 0.814 | 0.54 |
S.E.: standard error; OR: odds ratios.
Figure 1FZD1 immunostaining in the articular cartilage from the KBD and the normal controls (positive staining is yellow).