| Literature DB >> 30717090 |
Yanan Li1,2, Xue Kong3,4, Haibin Zhang5.
Abstract
A novel, cold-adapted, and acid-base stable manganese superoxide dismutase (Ps-Mn-SOD) was cloned from hadal sea cucumber Paelopatides sp. The dimeric recombinant enzyme exhibited approximately 60 kDa in molecular weight, expressed activity from 0 °C to 70 °C with an optimal temperature of 0 °C, and resisted wide pH values from 2.2⁻13.0 with optimal activity (> 70%) at pH 5.0⁻12.0. The Km and Vmax of Ps-Mn-SOD were 0.0329 ± 0.0040 mM and 9112 ± 248 U/mg, respectively. At tested conditions, Ps-Mn-SOD was relatively stable in divalent metal ion and other chemicals, such as β-mercaptoethanol, dithiothreitol, Tween 20, Triton X-100, and Chaps. Furthermore, the enzyme showed striking stability in 5 M urea or 4 M guanidine hydrochloride, resisted digestion by proteases, and tolerated a high hydrostatic pressure of 100 MPa. The resistance of Ps-Mn-SOD against low temperature, extreme acidity and alkalinity, chemicals, proteases, and high pressure make it a potential candidate in biopharmaceutical and nutraceutical fields.Entities:
Keywords: deep-sea enzyme; expression; pCold vector; purification
Mesh:
Substances:
Year: 2019 PMID: 30717090 PMCID: PMC6410416 DOI: 10.3390/md17020084
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Nucleotide and corresponding amino acid sequences of Ps-Mn-SOD. The signal peptide is drawn with a red line. The signature sequence DVWEHAYY is underlined with dotted line. N- and C-terminal domains are marked with purple and green shades, respectively. Four conserved amino acid residues for manganese coordination are boxed. Asterisk points to the highly conserved Tyr-35 residue. Cylinders and arrows represent helices and strands, respectively.
Figure 2Multiple alignment of Ps-Mn-SOD with other invertebrates. Mn-SOD signature sequence is boxed. Triangles point to the active sites for manganese coordination. Asterisk points to the highly conserved Tyr-35 residue.
Figure 3Neighbor-joining phylogenetic tree of SODs based on amino acid sequence homology. Bootstrap values below 50 are cut off. Ps-Mn-SOD is displayed in bold.
Figure 4Effects of temperature (A), pH (B), urea and guanidine hydrochloride (C), and high hydrostatic pressure (D) on Ps-Mn-SOD. Ps-SOD and Be-SOD represent SOD from Paelopatides sp. and bovine erythrocytes, respectively.
Effects of metal ions on Ps-Mn-SOD. ** p < 0.01.
| Divalent Metal Ions | Concentration/mmol·L−1 | Relative Activity/% |
|---|---|---|
| Control | — | 100 ± 2.39 |
| Mn2+ | 0.1 | 92.89 ± 1.53 ** |
| 1 | 84.99 ± 2.77 ** | |
| Co2+ | 0.1 | 80.13 ± 1.23 ** |
| 1 | 61.49 ± 1.54 ** | |
| Ni2+ | 0.1 | 95.70 ± 2.38 ** |
| 1 | 94.42 ± 2.92 ** | |
| Zn2+ | 0.1 | 90.25 ± 1.76 ** |
| 1 | 90.99 ± 4.63 ** | |
| Cu2+ | 0.1 | 98.39 ± 3.97 |
| 1 | 88.99 ± 5.44 ** | |
| Ba2+ | 0.1 | 99.16 ± 2.18 |
| 1 | 95.94 ± 2.40 ** | |
| Mg2+ | 0.1 | 100.68 ± 3.27 |
| 1 | 100.61 ± 2.16 | |
| Ca2+ | 0.1 | 99.71 ± 1.13 |
| 1 | 100.39 ± 4.48 |
Effects of inhibitors, reductant, and detergents. * p < 0.05; ** p < 0.01.
| Divalent Metal Ions | Concentration | Relative Activity/% |
|---|---|---|
| Control | — | 100 ± 2.84 |
| EDTA | 1 mmol·L−1 | 64.33 ± 3.08 ** |
| 10 mmol·L−1 | 58.03 ± 2.59 ** | |
| DTT | 1 mmol·L−1 | 96.36 ± 4.65 |
| 10 mmol·L−1 | 97.00 ± 5.46 | |
| β-ME | 1 mmol·L−1 | 96.53 ± 4.47 |
| 10 mmol·L−1 | 101.85 ± 3.72 | |
| Tween 20 | 0.1% | 109.96 ± 6.62 ** |
| 1% | 105.01 ± 3.28 ** | |
| Chaps | 0.1% | 103.13 ± 2.32 * |
| 1% | 99.32 ± 3.66 | |
| Triton X-100 | 0.1% | 105.02 ± 3.2 9** |
| 1% | 99.22 ± 3.79 | |
| SDS | 0.1% | 5.21 ± 3.45 ** |
| 1% | 6.11 ± 4.15 ** |
Figure 5SOD type assay.
Cleavage effect of digestive enzyme on Ps-Mn-SOD at different time periods. Results are shown as mean (n = 3) ± SD. ** p < 0.01.
| Time (h) | Relative Activity (%) |
|---|---|
| 0 | 100 ± 2.21 |
| 1 | 108.66 ± 5.70 |
| 2 | 104.46 ± 4.54 |
| 3 | 103.73 ± 3.24 |
| 4 | 106.72 ± 4.80 |