| Literature DB >> 30713733 |
Qin Ai Wong1, Tze Shyang Chia1, Huey Chong Kwong2, C S Chidan Kumar3, Ching Kheng Quah1, Md Azharul Arafath4.
Abstract
The mol-ecular structure of the title chalcone derivative, C15H10FNO3, is nearly planar and the mol-ecule adopts a trans configuration with respect to the C=C double bond. The nitro group is nearly coplanar with the attached benzene ring, which is nearly parallel to the second benzene ring. In the crystal, mol-ecules are connected by pairs of weak inter-molecular C-H⋯O hydrogen bonds into inversion dimers. The dimers are further linked by another C-H⋯O hydrogen bond and a C-H⋯F hydrogen bond into sheets parallel to (104). π-π inter-actions occur between the sheets, with a centroid-centroid distance of 3.8860 (11) Å. Hirshfeld surface analysis was used to investigate and qu-antify the inter-molecular inter-actions.Entities:
Keywords: Hirshfeld surface analysis; chalcone; crystal structure; hydrogen bond
Year: 2019 PMID: 30713733 PMCID: PMC6323869 DOI: 10.1107/S2056989018017450
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with atom labels and 30% probability displacement ellipsoids.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C4—H4 | 0.93 | 2.53 | 3.183 (2) | 128 |
| C11—H11 | 0.93 | 2.43 | 3.329 (2) | 161 |
| C15—H15 | 0.93 | 2.58 | 3.489 (2) | 166 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2A partial packing diagram of the title compound, showing a two-dimensional sheet formed by C—H⋯O and C—H⋯F hydrogen bonds (dotted lines). H atoms not involved in hydrogen bonding are omitted for clarity. [Symmetry codes: (i) x, y + 1, z; (ii) −x + 2, −y + 1, −z + 1; (iii) −x, y − , −z + .]
Figure 3A partial packing diagram of the title compound, showing three separated sheets parallel to (104). The intermolecular π–π interactions between adjacent sheets are represented as red and blue dashed lines, involving Cg1⋯Cg1 and Cg2⋯Cg2, respectively. Cg1 and Cg2 are the centroids of the C1–C6 and C10–C15 benzene rings, respectively.
Figure 4The Hirshfeld surfaces mapped with (a) d norm and (b) electrostatic potential for the central molecule of the title compound surrounded by six neighbouring molecules.
Figure 5The two-dimensional fingerprint plots of the title compound for different intermolecular contacts and their percentage contributions to the Hirshfeld surface. d i and d e are the distances from the Hirshfeld surface to the nearest atom interior and exterior, respectively, to the surface.
Figure 6(a) Front and (b) rear views of the Hirshfeld surface mapped over shape-index for the title compound. The dashed-line circles highlight unique patterns of red and blue ‘triangles’.
Figure 7(a) Front and (b) rear views of the Hirshfeld surface mapped over curvedness.
Experimental details
| Crystal data | |
| Chemical formula | C15H10FNO3 |
|
| 271.24 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 3.8860 (5), 13.2324 (16), 24.199 (3) |
| β (°) | 91.963 (2) |
|
| 1243.6 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.49 × 0.35 × 0.31 |
| Data collection | |
| Diffractometer | Bruker SMART APEXII DUO CCD area-detector |
| Absorption correction | Multi-scan ( |
|
| 0.794, 0.926 |
| No. of measured, independent and observed [ | 10823, 2418, 1922 |
|
| 0.026 |
| (sin θ/λ)max (Å−1) | 0.617 |
| Refinement | |
|
| 0.043, 0.138, 1.04 |
| No. of reflections | 2418 |
| No. of parameters | 181 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.21, −0.17 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SHELXS2013 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).
| C15H10FNO3 | |
| Monoclinic, | Mo |
| Cell parameters from 4607 reflections | |
| θ = 2.3–30.4° | |
| µ = 0.11 mm−1 | |
| β = 91.963 (2)° | |
| Block, yellow | |
| 0.49 × 0.35 × 0.31 mm |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 2418 independent reflections |
| Radiation source: fine-focus sealed tube | 1922 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.0°, θmin = 1.8° |
| Absorption correction: multi-scan ( | |
| 10823 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2418 reflections | Δρmax = 0.21 e Å−3 |
| 181 parameters | Δρmin = −0.17 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| F1 | 0.7362 (4) | −0.01394 (9) | 0.57883 (5) | 0.0899 (5) | |
| O1 | −0.1032 (4) | 0.85915 (12) | 0.77829 (6) | 0.0784 (5) | |
| O2 | 0.0898 (6) | 0.97163 (12) | 0.72386 (8) | 0.1026 (7) | |
| O3 | 0.7296 (4) | 0.61266 (9) | 0.55381 (5) | 0.0665 (4) | |
| N1 | 0.0476 (4) | 0.88363 (12) | 0.73723 (6) | 0.0578 (4) | |
| C1 | 0.3037 (4) | 0.63109 (12) | 0.68456 (6) | 0.0460 (4) | |
| H1A | 0.2995 | 0.5638 | 0.6955 | 0.055* | |
| C2 | 0.1758 (4) | 0.70499 (13) | 0.71878 (6) | 0.0479 (4) | |
| H2A | 0.0857 | 0.6880 | 0.7527 | 0.057* | |
| C3 | 0.1848 (4) | 0.80391 (12) | 0.70162 (6) | 0.0443 (4) | |
| C4 | 0.3144 (5) | 0.83206 (12) | 0.65149 (7) | 0.0502 (4) | |
| H4A | 0.3157 | 0.8995 | 0.6407 | 0.060* | |
| C5 | 0.4418 (4) | 0.75795 (12) | 0.61790 (6) | 0.0474 (4) | |
| H5A | 0.5311 | 0.7757 | 0.5841 | 0.057* | |
| C6 | 0.4388 (4) | 0.65682 (11) | 0.63385 (6) | 0.0397 (4) | |
| C7 | 0.5886 (4) | 0.58109 (12) | 0.59466 (6) | 0.0437 (4) | |
| C8 | 0.5671 (4) | 0.47246 (12) | 0.60636 (7) | 0.0465 (4) | |
| H8A | 0.4609 | 0.4501 | 0.6380 | 0.056* | |
| C9 | 0.6995 (4) | 0.40594 (13) | 0.57171 (6) | 0.0461 (4) | |
| H9A | 0.8020 | 0.4332 | 0.5409 | 0.055* | |
| C10 | 0.7052 (4) | 0.29630 (12) | 0.57557 (6) | 0.0441 (4) | |
| C11 | 0.8374 (4) | 0.24150 (13) | 0.53176 (7) | 0.0498 (4) | |
| H11A | 0.9211 | 0.2760 | 0.5015 | 0.060* | |
| C12 | 0.8463 (5) | 0.13763 (14) | 0.53240 (8) | 0.0573 (5) | |
| H12A | 0.9314 | 0.1015 | 0.5029 | 0.069* | |
| C13 | 0.7264 (5) | 0.08894 (13) | 0.57778 (7) | 0.0571 (5) | |
| C14 | 0.5966 (5) | 0.13871 (13) | 0.62234 (7) | 0.0571 (5) | |
| H14A | 0.5188 | 0.1032 | 0.6526 | 0.069* | |
| C15 | 0.5851 (4) | 0.24251 (13) | 0.62076 (7) | 0.0504 (4) | |
| H15A | 0.4958 | 0.2776 | 0.6503 | 0.061* |
| F1 | 0.1376 (12) | 0.0406 (6) | 0.0943 (9) | 0.0055 (6) | 0.0442 (9) | 0.0029 (6) |
| O1 | 0.1010 (11) | 0.0756 (10) | 0.0608 (8) | 0.0045 (8) | 0.0352 (8) | −0.0084 (7) |
| O2 | 0.1626 (18) | 0.0471 (9) | 0.1018 (12) | 0.0065 (9) | 0.0579 (12) | −0.0095 (8) |
| O3 | 0.0962 (10) | 0.0503 (7) | 0.0550 (7) | −0.0027 (7) | 0.0350 (7) | 0.0017 (6) |
| N1 | 0.0665 (10) | 0.0540 (10) | 0.0534 (9) | 0.0024 (7) | 0.0107 (7) | −0.0086 (7) |
| C1 | 0.0552 (10) | 0.0401 (9) | 0.0430 (8) | −0.0028 (7) | 0.0065 (7) | 0.0049 (6) |
| C2 | 0.0546 (9) | 0.0502 (10) | 0.0395 (8) | −0.0036 (7) | 0.0103 (7) | 0.0030 (7) |
| C3 | 0.0465 (9) | 0.0449 (9) | 0.0417 (8) | −0.0009 (7) | 0.0050 (7) | −0.0049 (7) |
| C4 | 0.0622 (10) | 0.0374 (8) | 0.0515 (9) | −0.0012 (7) | 0.0107 (8) | 0.0028 (7) |
| C5 | 0.0580 (10) | 0.0443 (9) | 0.0406 (8) | −0.0030 (7) | 0.0110 (7) | 0.0055 (7) |
| C6 | 0.0409 (8) | 0.0398 (8) | 0.0386 (8) | −0.0025 (6) | 0.0027 (6) | 0.0008 (6) |
| C7 | 0.0469 (9) | 0.0449 (9) | 0.0397 (8) | −0.0027 (7) | 0.0056 (6) | 0.0004 (6) |
| C8 | 0.0502 (9) | 0.0438 (9) | 0.0459 (8) | −0.0013 (7) | 0.0098 (7) | 0.0018 (7) |
| C9 | 0.0475 (9) | 0.0464 (9) | 0.0447 (8) | −0.0016 (7) | 0.0061 (7) | 0.0018 (7) |
| C10 | 0.0424 (8) | 0.0450 (9) | 0.0450 (8) | 0.0008 (7) | 0.0056 (7) | −0.0011 (7) |
| C11 | 0.0562 (10) | 0.0493 (10) | 0.0449 (9) | 0.0016 (7) | 0.0155 (7) | 0.0020 (7) |
| C12 | 0.0689 (11) | 0.0505 (10) | 0.0538 (10) | 0.0072 (8) | 0.0206 (9) | −0.0059 (8) |
| C13 | 0.0689 (12) | 0.0398 (9) | 0.0634 (11) | 0.0028 (8) | 0.0151 (9) | 0.0014 (8) |
| C14 | 0.0711 (12) | 0.0503 (10) | 0.0512 (10) | −0.0003 (8) | 0.0194 (8) | 0.0073 (8) |
| C15 | 0.0586 (10) | 0.0494 (10) | 0.0443 (9) | 0.0032 (7) | 0.0147 (7) | −0.0024 (7) |
| F1—C13 | 1.362 (2) | C7—C8 | 1.468 (2) |
| O1—N1 | 1.2147 (19) | C8—C9 | 1.331 (2) |
| O2—N1 | 1.221 (2) | C8—H8A | 0.9300 |
| O3—C7 | 1.2204 (19) | C9—C10 | 1.454 (2) |
| N1—C3 | 1.473 (2) | C9—H9A | 0.9300 |
| C1—C2 | 1.385 (2) | C10—C11 | 1.397 (2) |
| C1—C6 | 1.393 (2) | C10—C15 | 1.398 (2) |
| C1—H1A | 0.9300 | C11—C12 | 1.375 (2) |
| C2—C3 | 1.374 (2) | C11—H11A | 0.9300 |
| C2—H2A | 0.9300 | C12—C13 | 1.369 (3) |
| C3—C4 | 1.381 (2) | C12—H12A | 0.9300 |
| C4—C5 | 1.377 (2) | C13—C14 | 1.374 (2) |
| C4—H4A | 0.9300 | C14—C15 | 1.375 (2) |
| C5—C6 | 1.393 (2) | C14—H14A | 0.9300 |
| C5—H5A | 0.9300 | C15—H15A | 0.9300 |
| C6—C7 | 1.510 (2) | ||
| O1—N1—O2 | 122.95 (16) | C9—C8—C7 | 120.02 (14) |
| O1—N1—C3 | 118.80 (16) | C9—C8—H8A | 120.0 |
| O2—N1—C3 | 118.24 (15) | C7—C8—H8A | 120.0 |
| C2—C1—C6 | 120.53 (14) | C8—C9—C10 | 128.67 (15) |
| C2—C1—H1A | 119.7 | C8—C9—H9A | 115.7 |
| C6—C1—H1A | 119.7 | C10—C9—H9A | 115.7 |
| C3—C2—C1 | 118.60 (14) | C11—C10—C15 | 118.08 (15) |
| C3—C2—H2A | 120.7 | C11—C10—C9 | 118.33 (14) |
| C1—C2—H2A | 120.7 | C15—C10—C9 | 123.59 (14) |
| C2—C3—C4 | 122.43 (15) | C12—C11—C10 | 121.34 (15) |
| C2—C3—N1 | 119.47 (14) | C12—C11—H11A | 119.3 |
| C4—C3—N1 | 118.09 (15) | C10—C11—H11A | 119.3 |
| C5—C4—C3 | 118.43 (15) | C13—C12—C11 | 118.06 (16) |
| C5—C4—H4A | 120.8 | C13—C12—H12A | 121.0 |
| C3—C4—H4A | 120.8 | C11—C12—H12A | 121.0 |
| C4—C5—C6 | 120.95 (14) | F1—C13—C12 | 118.38 (16) |
| C4—C5—H5A | 119.5 | F1—C13—C14 | 118.37 (16) |
| C6—C5—H5A | 119.5 | C12—C13—C14 | 123.25 (17) |
| C5—C6—C1 | 119.06 (14) | C13—C14—C15 | 118.00 (15) |
| C5—C6—C7 | 117.17 (13) | C13—C14—H14A | 121.0 |
| C1—C6—C7 | 123.78 (14) | C15—C14—H14A | 121.0 |
| O3—C7—C8 | 121.43 (15) | C14—C15—C10 | 121.26 (15) |
| O3—C7—C6 | 118.36 (14) | C14—C15—H15A | 119.4 |
| C8—C7—C6 | 120.20 (13) | C10—C15—H15A | 119.4 |
| C6—C1—C2—C3 | 0.0 (3) | C1—C6—C7—C8 | 6.1 (2) |
| C1—C2—C3—C4 | 0.4 (3) | O3—C7—C8—C9 | −0.8 (3) |
| C1—C2—C3—N1 | 179.54 (15) | C6—C7—C8—C9 | −179.99 (15) |
| O1—N1—C3—C2 | −7.6 (2) | C7—C8—C9—C10 | −179.96 (15) |
| O2—N1—C3—C2 | 172.67 (18) | C8—C9—C10—C11 | 175.31 (17) |
| O1—N1—C3—C4 | 171.54 (17) | C8—C9—C10—C15 | −4.6 (3) |
| O2—N1—C3—C4 | −8.2 (3) | C15—C10—C11—C12 | 0.8 (3) |
| C2—C3—C4—C5 | −0.6 (3) | C9—C10—C11—C12 | −179.15 (16) |
| N1—C3—C4—C5 | −179.74 (15) | C10—C11—C12—C13 | −1.0 (3) |
| C3—C4—C5—C6 | 0.3 (3) | C11—C12—C13—F1 | −179.66 (17) |
| C4—C5—C6—C1 | 0.1 (3) | C11—C12—C13—C14 | 0.4 (3) |
| C4—C5—C6—C7 | −179.16 (15) | F1—C13—C14—C15 | −179.50 (17) |
| C2—C1—C6—C5 | −0.3 (2) | C12—C13—C14—C15 | 0.5 (3) |
| C2—C1—C6—C7 | 178.91 (15) | C13—C14—C15—C10 | −0.7 (3) |
| C5—C6—C7—O3 | 6.1 (2) | C11—C10—C15—C14 | 0.1 (3) |
| C1—C6—C7—O3 | −173.10 (16) | C9—C10—C15—C14 | −179.98 (16) |
| C5—C6—C7—C8 | −174.65 (15) |
| H··· | ||||
| C4—H4 | 0.93 | 2.53 | 3.183 (2) | 128 |
| C11—H11 | 0.93 | 2.43 | 3.329 (2) | 161 |
| C15—H15 | 0.93 | 2.58 | 3.489 (2) | 166 |