| Literature DB >> 30713732 |
Tze Shyang Chia1, Huey Chong Kwong2, Ai Jia Sim1, Weng Zhun Ng1, Qin Ai Wong1, C S Chidan Kumar3, Ching Kheng Quah1, Md Azharul Arafath4.
Abstract
In this study, a new monoclinic polymorph (space group C2/c) of 2,2'-methyl-enebis(isoindoline-1,3-dione), C17H10N2O4, is reported and compared to the previously reported triclinic polymorph (space group P ). Similarly, both polymorphs consist of a unique mol-ecule in the asymmetric unit (Z' = 1). The mol-ecular conformations of the two polymorphs are very similar, as shown by the r.m.s. deviation of 0.368 Å (excluding all H atoms). The inter-molecular inter-actions of both polymorphs are described along with the Hirshfeld surface analysis, and the lattice energies are calculated.Entities:
Keywords: Hirshfeld surface analysis; PIXEL; crystal structure; isoindoline-1,3-dione; polymorphism
Year: 2019 PMID: 30713732 PMCID: PMC6323873 DOI: 10.1107/S2056989018017425
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Molecular structure of 1β with atom labels and 30% probability displacement ellipsoids.
Figure 2An overlay diagram for the molecules of 1α (red) and 1β (blue).
Figure 3A partial crystal packing diagram of 1β viewed along the b axis. Dashed lines represent weak intermolecular C—H⋯O hydrogen bonds. Hydrogen atoms which are not involved in hydrogen bonding are omitted for clarity.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3 | 0.93 | 2.43 | 3.150 (6) | 134 |
| C4—H4 | 0.93 | 2.60 | 3.300 (5) | 133 |
| C15—H15 | 0.93 | 2.46 | 3.271 (7) | 146 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 4The two-dimensional fingerprint plots of 1β for (a) all, (b) H⋯O/O⋯H, (c) H⋯H, (d) H⋯C/C⋯H, (e) O⋯C/C⋯O and (f) C⋯C contacts. d i and d e are the distances from the Hirshfeld surface to the nearest atom interior and exterior, respectively, to the surface.
Figure 5The Hirshfeld surface mapped over d norm for the molecule in the asymmetric unit of 1β hydrogen-bonded to two neighbouring molecules.
Figure 6The Hirshfeld surface mapped over shape-index for 1β.
Figure 7The Hirshfeld surface mapped over curvedness for 1β.
Experimental details
| Crystal data | |
| Chemical formula | C17H10N2O4 |
|
| 306.27 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 296 |
|
| 26.296 (5), 7.9996 (15), 16.987 (4) |
| β (°) | 129.165 (10) |
|
| 2770.5 (10) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.44 × 0.13 × 0.02 |
| Data collection | |
| Diffractometer | Bruker SMART APEXII DUO CCD area-detector |
| Absorption correction | Multi-scan ( |
|
| 0.649, 0.745 |
| No. of measured, independent and observed [ | 29675, 2444, 1213 |
|
| 0.128 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.063, 0.158, 1.02 |
| No. of reflections | 2444 |
| No. of parameters | 208 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.14, −0.17 |
Computer programs: APEX2 and SAINT (Bruker, 2009 ▸), SHELXS2013 and SHELXTL (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2008 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).
| C17H10N2O4 | |
| Monoclinic, | Mo |
| Cell parameters from 1601 reflections | |
| θ = 2.4–26.4° | |
| µ = 0.11 mm−1 | |
| β = 129.165 (10)° | |
| Block, colourless | |
| 0.44 × 0.13 × 0.02 mm |
| Bruker SMART APEXII DUO CCD area-detector diffractometer | 2444 independent reflections |
| Radiation source: fine-focus sealed tube | 1213 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.0°, θmin = 2.0° |
| Absorption correction: multi-scan ( | |
| 29675 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2444 reflections | Δρmax = 0.14 e Å−3 |
| 208 parameters | Δρmin = −0.17 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | 0.05520 (11) | 0.9015 (3) | 0.12678 (18) | 0.0786 (8) | |
| O2 | 0.20385 (12) | 0.6374 (3) | 0.11771 (17) | 0.0769 (8) | |
| O3 | 0.32974 (11) | 0.7796 (3) | 0.34998 (18) | 0.0817 (8) | |
| O4 | 0.15774 (12) | 0.6563 (3) | 0.34093 (18) | 0.0765 (8) | |
| N1 | 0.14191 (12) | 0.7785 (3) | 0.14765 (19) | 0.0563 (8) | |
| N2 | 0.23369 (12) | 0.7434 (3) | 0.32431 (19) | 0.0577 (8) | |
| C1 | 0.07580 (16) | 0.8101 (4) | 0.0966 (3) | 0.0595 (9) | |
| C2 | 0.04023 (16) | 0.7104 (4) | 0.0028 (2) | 0.0547 (9) | |
| C3 | −0.02562 (16) | 0.6944 (4) | −0.0726 (2) | 0.0620 (10) | |
| H3A | −0.0554 | 0.7553 | −0.0718 | 0.074* | |
| C4 | −0.04608 (18) | 0.5854 (5) | −0.1492 (3) | 0.0777 (11) | |
| H4A | −0.0908 | 0.5706 | −0.2014 | 0.093* | |
| C5 | −0.0021 (2) | 0.4972 (5) | −0.1507 (3) | 0.0798 (12) | |
| H5A | −0.0176 | 0.4222 | −0.2033 | 0.096* | |
| C6 | 0.06535 (19) | 0.5173 (5) | −0.0753 (3) | 0.0697 (10) | |
| H6A | 0.0955 | 0.4600 | −0.0768 | 0.084* | |
| C7 | 0.08469 (15) | 0.6259 (4) | 0.0011 (2) | 0.0531 (9) | |
| C8 | 0.15090 (17) | 0.6749 (4) | 0.0923 (2) | 0.0568 (9) | |
| C9 | 0.19381 (15) | 0.8576 (5) | 0.2405 (2) | 0.0671 (10) | |
| H9A | 0.1752 | 0.9399 | 0.2578 | 0.081* | |
| H9B | 0.2216 | 0.9165 | 0.2305 | 0.081* | |
| C10 | 0.30011 (17) | 0.7197 (5) | 0.3748 (3) | 0.0625 (10) | |
| C11 | 0.32396 (17) | 0.6090 (4) | 0.4617 (2) | 0.0591 (9) | |
| C12 | 0.38561 (19) | 0.5506 (5) | 0.5381 (3) | 0.0765 (11) | |
| H12A | 0.4214 | 0.5788 | 0.5418 | 0.092* | |
| C13 | 0.3923 (2) | 0.4479 (6) | 0.6095 (3) | 0.0930 (14) | |
| H13A | 0.4336 | 0.4071 | 0.6628 | 0.112* | |
| C14 | 0.3398 (3) | 0.4050 (5) | 0.6036 (3) | 0.0956 (14) | |
| H14A | 0.3458 | 0.3341 | 0.6522 | 0.115* | |
| C15 | 0.2779 (2) | 0.4654 (5) | 0.5263 (3) | 0.0784 (11) | |
| H15A | 0.2420 | 0.4371 | 0.5222 | 0.094* | |
| C16 | 0.27123 (18) | 0.5674 (4) | 0.4564 (3) | 0.0607 (9) | |
| C17 | 0.21289 (18) | 0.6552 (4) | 0.3696 (3) | 0.0590 (9) |
| O1 | 0.0699 (17) | 0.0814 (19) | 0.0879 (18) | 0.0089 (14) | 0.0514 (15) | −0.0122 (15) |
| O2 | 0.0556 (16) | 0.101 (2) | 0.0781 (17) | 0.0107 (14) | 0.0441 (14) | 0.0021 (15) |
| O3 | 0.0572 (16) | 0.107 (2) | 0.0841 (18) | −0.0104 (14) | 0.0462 (15) | 0.0008 (15) |
| O4 | 0.0587 (16) | 0.094 (2) | 0.0815 (17) | −0.0156 (14) | 0.0465 (14) | −0.0159 (14) |
| N1 | 0.0423 (17) | 0.072 (2) | 0.0512 (17) | 0.0008 (14) | 0.0278 (15) | −0.0056 (15) |
| N2 | 0.0450 (18) | 0.073 (2) | 0.0508 (17) | −0.0036 (15) | 0.0279 (15) | 0.0004 (15) |
| C1 | 0.054 (2) | 0.064 (3) | 0.063 (2) | 0.0040 (19) | 0.038 (2) | 0.003 (2) |
| C2 | 0.051 (2) | 0.058 (2) | 0.056 (2) | −0.0022 (18) | 0.0348 (19) | 0.0027 (18) |
| C3 | 0.049 (2) | 0.068 (3) | 0.058 (2) | 0.0026 (18) | 0.029 (2) | 0.007 (2) |
| C4 | 0.060 (2) | 0.093 (3) | 0.062 (3) | −0.010 (2) | 0.030 (2) | 0.003 (2) |
| C5 | 0.089 (3) | 0.093 (3) | 0.063 (3) | −0.020 (3) | 0.050 (3) | −0.010 (2) |
| C6 | 0.076 (3) | 0.082 (3) | 0.060 (2) | 0.001 (2) | 0.047 (2) | −0.002 (2) |
| C7 | 0.048 (2) | 0.067 (2) | 0.048 (2) | 0.0001 (18) | 0.0316 (18) | 0.0034 (18) |
| C8 | 0.049 (2) | 0.067 (2) | 0.059 (2) | 0.0068 (19) | 0.036 (2) | 0.0113 (19) |
| C9 | 0.059 (2) | 0.072 (3) | 0.057 (2) | −0.0047 (19) | 0.030 (2) | −0.001 (2) |
| C10 | 0.052 (2) | 0.075 (3) | 0.061 (2) | −0.008 (2) | 0.036 (2) | −0.012 (2) |
| C11 | 0.054 (2) | 0.067 (2) | 0.049 (2) | −0.0031 (19) | 0.029 (2) | −0.0094 (19) |
| C12 | 0.070 (3) | 0.080 (3) | 0.063 (3) | 0.009 (2) | 0.034 (2) | −0.008 (2) |
| C13 | 0.091 (3) | 0.090 (3) | 0.063 (3) | 0.022 (3) | 0.032 (3) | 0.003 (2) |
| C14 | 0.135 (4) | 0.070 (3) | 0.077 (3) | 0.010 (3) | 0.065 (3) | 0.001 (2) |
| C15 | 0.103 (3) | 0.065 (3) | 0.075 (3) | −0.010 (2) | 0.060 (3) | −0.012 (2) |
| C16 | 0.069 (2) | 0.057 (2) | 0.051 (2) | −0.009 (2) | 0.036 (2) | −0.0096 (19) |
| C17 | 0.063 (2) | 0.059 (2) | 0.060 (2) | −0.014 (2) | 0.041 (2) | −0.0183 (19) |
| O1—C1 | 1.201 (4) | C5—H5A | 0.9300 |
| O2—C8 | 1.207 (3) | C6—C7 | 1.365 (4) |
| O3—C10 | 1.195 (4) | C6—H6A | 0.9300 |
| O4—C17 | 1.203 (4) | C7—C8 | 1.476 (4) |
| N1—C8 | 1.381 (4) | C9—H9A | 0.9700 |
| N1—C1 | 1.391 (4) | C9—H9B | 0.9700 |
| N1—C9 | 1.425 (4) | C10—C11 | 1.480 (5) |
| N2—C17 | 1.386 (4) | C11—C12 | 1.369 (4) |
| N2—C10 | 1.389 (4) | C11—C16 | 1.372 (4) |
| N2—C9 | 1.441 (4) | C12—C13 | 1.380 (5) |
| C1—C2 | 1.473 (4) | C12—H12A | 0.9300 |
| C2—C3 | 1.362 (4) | C13—C14 | 1.363 (5) |
| C2—C7 | 1.366 (4) | C13—H13A | 0.9300 |
| C3—C4 | 1.364 (5) | C14—C15 | 1.382 (5) |
| C3—H3A | 0.9300 | C14—H14A | 0.9300 |
| C4—C5 | 1.369 (5) | C15—C16 | 1.358 (5) |
| C4—H4A | 0.9300 | C15—H15A | 0.9300 |
| C5—C6 | 1.394 (5) | C16—C17 | 1.470 (5) |
| C8—N1—C1 | 111.6 (3) | N1—C9—N2 | 113.7 (3) |
| C8—N1—C9 | 124.3 (3) | N1—C9—H9A | 108.8 |
| C1—N1—C9 | 123.8 (3) | N2—C9—H9A | 108.8 |
| C17—N2—C10 | 111.8 (3) | N1—C9—H9B | 108.8 |
| C17—N2—C9 | 125.1 (3) | N2—C9—H9B | 108.8 |
| C10—N2—C9 | 122.9 (3) | H9A—C9—H9B | 107.7 |
| O1—C1—N1 | 124.6 (3) | O3—C10—N2 | 125.0 (4) |
| O1—C1—C2 | 130.0 (3) | O3—C10—C11 | 129.2 (3) |
| N1—C1—C2 | 105.4 (3) | N2—C10—C11 | 105.8 (3) |
| C3—C2—C7 | 122.1 (3) | C12—C11—C16 | 121.5 (4) |
| C3—C2—C1 | 129.0 (3) | C12—C11—C10 | 130.7 (4) |
| C7—C2—C1 | 108.9 (3) | C16—C11—C10 | 107.8 (3) |
| C2—C3—C4 | 117.3 (3) | C11—C12—C13 | 117.0 (4) |
| C2—C3—H3A | 121.4 | C11—C12—H12A | 121.5 |
| C4—C3—H3A | 121.4 | C13—C12—H12A | 121.5 |
| C3—C4—C5 | 121.3 (3) | C14—C13—C12 | 121.6 (4) |
| C3—C4—H4A | 119.4 | C14—C13—H13A | 119.2 |
| C5—C4—H4A | 119.4 | C12—C13—H13A | 119.2 |
| C4—C5—C6 | 121.5 (4) | C13—C14—C15 | 120.8 (4) |
| C4—C5—H5A | 119.3 | C13—C14—H14A | 119.6 |
| C6—C5—H5A | 119.3 | C15—C14—H14A | 119.6 |
| C7—C6—C5 | 116.2 (3) | C16—C15—C14 | 117.7 (4) |
| C7—C6—H6A | 121.9 | C16—C15—H15A | 121.1 |
| C5—C6—H6A | 121.9 | C14—C15—H15A | 121.1 |
| C6—C7—C2 | 121.6 (3) | C15—C16—C11 | 121.4 (4) |
| C6—C7—C8 | 130.6 (3) | C15—C16—C17 | 129.8 (4) |
| C2—C7—C8 | 107.7 (3) | C11—C16—C17 | 108.8 (3) |
| O2—C8—N1 | 124.1 (3) | O4—C17—N2 | 124.6 (3) |
| O2—C8—C7 | 129.7 (3) | O4—C17—C16 | 129.6 (4) |
| N1—C8—C7 | 106.2 (3) | N2—C17—C16 | 105.8 (3) |
| C8—N1—C1—O1 | −177.0 (3) | C17—N2—C9—N1 | −67.9 (4) |
| C9—N1—C1—O1 | −3.1 (5) | C10—N2—C9—N1 | 117.6 (3) |
| C8—N1—C1—C2 | 2.8 (3) | C17—N2—C10—O3 | 178.7 (3) |
| C9—N1—C1—C2 | 176.7 (3) | C9—N2—C10—O3 | −6.2 (5) |
| O1—C1—C2—C3 | −1.7 (6) | C17—N2—C10—C11 | −1.4 (3) |
| N1—C1—C2—C3 | 178.5 (3) | C9—N2—C10—C11 | 173.8 (3) |
| O1—C1—C2—C7 | 179.8 (4) | O3—C10—C11—C12 | 2.6 (6) |
| N1—C1—C2—C7 | 0.0 (3) | N2—C10—C11—C12 | −177.4 (3) |
| C7—C2—C3—C4 | 2.1 (5) | O3—C10—C11—C16 | −177.6 (4) |
| C1—C2—C3—C4 | −176.2 (3) | N2—C10—C11—C16 | 2.5 (4) |
| C2—C3—C4—C5 | −0.7 (5) | C16—C11—C12—C13 | 0.0 (5) |
| C3—C4—C5—C6 | −1.2 (6) | C10—C11—C12—C13 | 179.8 (3) |
| C4—C5—C6—C7 | 1.7 (5) | C11—C12—C13—C14 | 0.7 (6) |
| C5—C6—C7—C2 | −0.3 (5) | C12—C13—C14—C15 | −1.0 (6) |
| C5—C6—C7—C8 | 179.1 (3) | C13—C14—C15—C16 | 0.5 (6) |
| C3—C2—C7—C6 | −1.6 (5) | C14—C15—C16—C11 | 0.3 (5) |
| C1—C2—C7—C6 | 177.0 (3) | C14—C15—C16—C17 | −177.0 (3) |
| C3—C2—C7—C8 | 178.8 (3) | C12—C11—C16—C15 | −0.6 (5) |
| C1—C2—C7—C8 | −2.5 (3) | C10—C11—C16—C15 | 179.6 (3) |
| C1—N1—C8—O2 | 175.4 (3) | C12—C11—C16—C17 | 177.2 (3) |
| C9—N1—C8—O2 | 1.5 (5) | C10—C11—C16—C17 | −2.6 (4) |
| C1—N1—C8—C7 | −4.3 (3) | C10—N2—C17—O4 | 179.2 (3) |
| C9—N1—C8—C7 | −178.1 (3) | C9—N2—C17—O4 | 4.2 (5) |
| C6—C7—C8—O2 | 5.1 (6) | C10—N2—C17—C16 | −0.2 (3) |
| C2—C7—C8—O2 | −175.5 (3) | C9—N2—C17—C16 | −175.2 (3) |
| C6—C7—C8—N1 | −175.3 (3) | C15—C16—C17—O4 | 0.0 (6) |
| C2—C7—C8—N1 | 4.1 (3) | C11—C16—C17—O4 | −177.6 (3) |
| C8—N1—C9—N2 | −69.4 (4) | C15—C16—C17—N2 | 179.3 (3) |
| C1—N1—C9—N2 | 117.4 (3) | C11—C16—C17—N2 | 1.8 (4) |
| H··· | ||||
| C3—H3 | 0.93 | 2.43 | 3.150 (6) | 134 |
| C4—H4 | 0.93 | 2.60 | 3.300 (5) | 133 |
| C15—H15 | 0.93 | 2.46 | 3.271 (7) | 146 |