Literature DB >> 30707937

Identification and functional prediction of circRNAs in Populus Euphratica Oliv. heteromorphic leaves.

Cailin Li1, Shaowei Qin1, Lianghong Bao1, Zhongzhong Guo1, Lifeng Zhao2.   

Abstract

Populus euphratica Oliv. has typical heterophylly. Linear, lanceolate, ovate and broad-ovate leaves appeared in turn from sprouting to development, to maturity. The environmental adaptabilities of P. euphraticas with different leaves were also different. To explore the role of circRNAs on the morphogenesis of P. euphratica heteromorphic leaves (P.hl) and their stress response, the expression profile of circRNAs was analyzed by strand-specific RNA sequencing for the above four kinds of heteromorphic leaves. According to ceRNA hypothesis, 18 differentially expressed cirRNAs (DECs) could influence the expression of 84 mRNAs by antagonizing 23 miRNAs in five sample-pairs. Based on the function of 84 mRNAs, these DECs participate in development process, response to stimulus, response to hormonal et al. Therefore, these circRNAs were involved in the P.hl morphogenesis and stress response by interacting with miRNAs and mRNAs. Our study complemented the genebank of P. euphratica and provided a new strategy for studying leaf development.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CircRNAs; Functional prediction; Identification; Leaf morphogenesis; Populus euphratica Oliv.

Mesh:

Substances:

Year:  2019        PMID: 30707937     DOI: 10.1016/j.ygeno.2019.01.013

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  7 in total

1.  High-throughput sequencing reveals rhizosphere fungal community composition and diversity at different growth stages of Populus euphratica in the lower reaches of the Tarim River.

Authors:  Yuanyuan Li; Hanli Dang; Xinhua Lv; Zhongke Wang; Xiaozhen Pu; Li Zhuang
Journal:  PeerJ       Date:  2022-06-02       Impact factor: 3.061

Review 2.  Progress in studying heteromorphic leaves in Populus euphratica: leaf morphology, anatomical structure, development regulation and their ecological adaptation to arid environments.

Authors:  Zhihan Song; Xinbo Ni; Jian Yao; Fang Wang
Journal:  Plant Signal Behav       Date:  2021-01-11

3.  Identification and regulatory network analysis of SPL family transcription factors in Populus euphratica Oliv. heteromorphic leaves.

Authors:  Shao-Wei Qin; Liang-Hong Bao; Zhi-Gui He; Cai-Lin Li; Hong-Gui La; Li-Feng Zhao
Journal:  Sci Rep       Date:  2022-02-21       Impact factor: 4.996

4.  Genetic Architecture of Heterophylly: Single and Multi-Leaf Genome-Wide Association Mapping in Populus euphratica.

Authors:  Xuli Zhu; Fengshuo Sun; Mengmeng Sang; Meixia Ye; Wenhao Bo; Ang Dong; Rongling Wu
Journal:  Front Plant Sci       Date:  2022-06-15       Impact factor: 6.627

5.  Circular RNAs acting as ceRNAs mediated by miRNAs may be involved in the synthesis of soybean fatty acids.

Authors:  Bohan Ma; Zhanzhu Liu; Wei Yan; Lixue Wang; Haobo He; Aijing Zhang; Zeyuan Li; Qiuzhu Zhao; Mingming Liu; Shuyan Guan; Siyan Liu; Jing Qu; Dan Yao; Jun Zhang
Journal:  Funct Integr Genomics       Date:  2021-06-19       Impact factor: 3.410

6.  NGS Methodologies and Computational Algorithms for the Prediction and Analysis of Plant Circular RNAs.

Authors:  Laura Carmen Terrón-Camero; Eduardo Andrés-León
Journal:  Methods Mol Biol       Date:  2021

7.  Regulatory networks of circRNAs related to transcription factors in Populus euphratica Oliv. heteromorphic leaves.

Authors:  Lianghong Bao; Shaowei Qin; CaiLin Li; Zhongzhong Guo; Lifeng Zhao
Journal:  Biosci Rep       Date:  2019-12-20       Impact factor: 3.840

  7 in total

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