Literature DB >> 30707423

Single-Molecule FRET Methods to Study Glutamate Receptors.

Douglas B Litwin1, Ryan J Durham1, Vasanthi Jayaraman2.   

Abstract

Single-molecule fluorescence energy transfer methods allow us to determine the complete structural landscape between the donor and acceptor fluorophores introduced on the protein of interest. This method is particularly attractive to study ion channel proteins as single-molecule current recordings have been used to study the function of these proteins for several decades. Here we describe the smFRET method used to study glutamate receptors.

Entities:  

Keywords:  Fluorescence; Glutamate receptor; NMDA receptor; Single-molecule FRET

Mesh：

Substances：

Year:  2019        PMID： 30707423      PMCID： PMC6608579          DOI： 10.1007/978-1-4939-9077-1_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  29 in total

1.  Accurate single-molecule FRET studies using multiparameter fluorescence detection.

Authors:  Evangelos Sisamakis; Alessandro Valeri; Stanislav Kalinin; Paul J Rothwell; Claus A M Seidel
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

2.  Analysis of single-molecule FRET trajectories using hidden Markov modeling.

Authors:  Sean A McKinney; Chirlmin Joo; Taekjip Ha
Journal:  Biophys J       Date:  2006-06-09       Impact factor: 4.033

3.  Single-molecule resolution of protein structure and interfacial dynamics on biomaterial surfaces.

Authors:  Sean Yu McLoughlin; Mark Kastantin; Daniel K Schwartz; Joel L Kaar
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-14       Impact factor: 11.205

Review 4.  A practical guide to single-molecule FRET.

Authors:  Rahul Roy; Sungchul Hohng; Taekjip Ha
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

5.  Site-specific incorporation of keto amino acids into functional G protein-coupled receptors using unnatural amino acid mutagenesis.

Authors:  Shixin Ye; Caroline Köhrer; Thomas Huber; Manija Kazmi; Pallavi Sachdev; Elsa C Y Yan; Aditi Bhagat; Uttam L RajBhandary; Thomas P Sakmar
Journal:  J Biol Chem       Date:  2007-11-08       Impact factor: 5.157

6.  Calmodulin binding to M-type K+ channels assayed by TIRF/FRET in living cells.

Authors:  Manjot Bal; Oleg Zaika; Pamela Martin; Mark S Shapiro
Journal:  J Physiol       Date:  2008-03-13       Impact factor: 5.182

7.  Role of conformational dynamics in α-amino-3-hydroxy-5-methylisoxazole-4-propionic acid (AMPA) receptor partial agonism.

Authors:  Swarna Ramaswamy; David Cooper; Nitesh Poddar; David M MacLean; Anu Rambhadran; J Nick Taylor; Heui Uhm; Christy F Landes; Vasanthi Jayaraman
Journal:  J Biol Chem       Date:  2012-10-31       Impact factor: 5.157

8.  Structural landscape of isolated agonist-binding domains from single AMPA receptors.

Authors:  Christy F Landes; Anu Rambhadran; J Nick Taylor; Ferandre Salatan; Vasanthi Jayaraman
Journal:  Nat Chem Biol       Date:  2011-02-06       Impact factor: 15.040

9.  Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis.

Authors:  Bo Shuang; David Cooper; J Nick Taylor; Lydia Kisley; Jixin Chen; Wenxiao Wang; Chun Biu Li; Tamiki Komatsuzaki; Christy F Landes
Journal:  J Phys Chem Lett       Date:  2014-08-28       Impact factor: 6.475

10.  Single molecule FRET reveals pore size and opening mechanism of a mechano-sensitive ion channel.

Authors:  Yong Wang; Yanxin Liu; Hannah A Deberg; Takeshi Nomura; Melinda Tonks Hoffman; Paul R Rohde; Klaus Schulten; Boris Martinac; Paul R Selvin
Journal:  Elife       Date:  2014-02-18       Impact factor: 8.140
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  5 in total

1.  Allosteric Changes in the NMDA Receptor Associated with Calcium-Dependent Inactivation.

Authors:  Nidhi Kaur Bhatia; Elisa Carrillo; Ryan J Durham; Vladimir Berka; Vasanthi Jayaraman
Journal:  Biophys J       Date:  2020-10-22       Impact factor: 4.033

2.  Conformational spread and dynamics in allostery of NMDA receptors.

Authors:  Ryan J Durham; Nabina Paudyal; Elisa Carrillo; Nidhi Kaur Bhatia; David M Maclean; Vladimir Berka; Drew M Dolino; Alemayehu A Gorfe; Vasanthi Jayaraman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-03       Impact factor: 11.205

3.  A de novo GRIN1 Variant Associated With Myoclonus and Developmental Delay: From Molecular Mechanism to Rescue Pharmacology.

Authors:  Jin Zhang; Weiting Tang; Nidhi K Bhatia; Yuchen Xu; Nabina Paudyal; Ding Liu; Sukhan Kim; Rui Song; Wenshu XiangWei; Gil Shaulsky; Scott J Myers; William Dobyns; Vasanthi Jayaraman; Stephen F Traynelis; Hongjie Yuan; Xiuhua Bozarth
Journal:  Front Genet       Date:  2021-08-03       Impact factor: 4.599

4.  Structural Arrangement Produced by Concanavalin A Binding to Homomeric GluK2 Receptors.

Authors:  Cuauhtemoc U Gonzalez; Elisa Carrillo; Vladimir Berka; Vasanthi Jayaraman
Journal:  Membranes (Basel)       Date:  2021-08-11

5.  Single molecule FRET methodology for investigating glutamate receptors.

Authors:  Nabina Paudyal; Nidhi Kaur Bhatia; Vasanthi Jayaraman
Journal:  Methods Enzymol       Date:  2021-03-09       Impact factor: 1.600
  5 in total

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