| Literature DB >> 30704982 |
Changting Xiao1, Priska Stahel1, Alicia L Carreiro2, Yu-Han Hung2, Satya Dash1, Ian Bookman3, Kimberly K Buhman2, Gary F Lewis4.
Abstract
BACKGROUND & AIMS: The small intestine regulates plasma triglyceride (TG) concentration. Within enterocytes, dietary TGs are packaged into chylomicrons (CMs) for secretion or stored temporarily in cytoplasmic lipid droplets (CLDs) until further mobilization. We and others have shown that oral and intravenous glucose enhances CM particle secretion in human beings, however, the mechanisms through which this occurs are incompletely understood.Entities:
Keywords: Cytoplasmic Lipid Droplets; Glucose; Intestine; Triglycerides
Mesh:
Substances:
Year: 2018 PMID: 30704982 PMCID: PMC6357697 DOI: 10.1016/j.jcmgh.2018.10.002
Source DB: PubMed Journal: Cell Mol Gastroenterol Hepatol ISSN: 2352-345X
Demographics and Biochemical Characteristics of Aim 1 Participants
| Subject | Age, | Weight, | Height, | BMI, | Waist, | Fasting glucose level, | Fasting TG level, | Fasting insulin level, |
|---|---|---|---|---|---|---|---|---|
| 1 | 58 | 72 | 178 | 23 | 95.5 | 5.6 | 0.76 | 35 |
| 2 | 46 | 77 | 166 | 27 | 101 | 4.9 | 0.73 | 48 |
| 3 | 46 | 87 | 182 | 26 | 100 | 4.5 | 0.97 | 37 |
| 4 | 53 | 76 | 172 | 25.7 | 87 | 4.9 | 1.99 | 94 |
| 5 | 29 | 87 | 182 | 26.4 | 94 | 4.4 | 0.68 | 36.5 |
| 6 | 57 | 84 | 179 | 26 | 88 | 4.5 | 0.59 | 29 |
| Means | 48.2 | 80.5 | 176.5 | 25.7 | 94.3 | 4.8 | 1.0 | 46.6 |
| SE | 4.4 | 2.6 | 2.6 | 0.6 | 2.4 | 0.2 | 0.2 | 9.8 |
BMI, body mass index.
Figure 1Lipid responses to oral glucose ingestion. (A) Study design. After an overnight fast, subjects ingested a high-fat liquid meal and 5 hours later ingested a glucose solution or equivalent volume of water in 2 randomized visits. (B) Blood glucose and (C) insulin concentrations during the study period. (D) TG concentrations in plasma during the study period, expressed as a percentage of baseline. (E–G) TG concentrations in total TRL, CM-sized TRL, and VLDL-sized TRL 2 hours after glucose or water ingestion, expressed as the percentage of levels at t = 5 hours. Arrows indicate time of glucose or water ingestion. All P values were with repeated-measures analysis of variance between 5 and 7 hours.
Demographics of Aim 2 Participants
| Glucose | Placebo | |
|---|---|---|
| N | 12 | 12 |
| BMI, | 25.3 ± 0.9 | 25.5 ± 1.5 |
| Age, | 34.6 ± 2.9 | 34.7 ± 3.1 |
| Sex | 4 M/8 F | 2 M/10 F |
NOTE. Data are means ± SE for BMI and age.
BMI, body mass index; F, female; M, male.
Figure 2Lipid pools within the intestinal mucosa. (A) A transmission electron microscopy image of an enterocyte from a duodenal biopsy specimen obtained 6 hours after a high-fat liquid meal and 1 hour after glucose ingestion. Lipid present within CLDs is shown (asterisk), as well as in secreted CMs in the intercellular space (white plus symbol). (B) An enterocyte containing lipid within several large CLDs (asterisk). (C) An enterocyte containing lipid within smaller lipid droplets in the ER, which are surrounded by a bilayer membrane and usually are observed at the apical side of the cell. (D) Lipid present within the Golgi of an enterocyte, which normally was observed above the nucleus. Scale bars: 1 μm (A, B, and D), and 0.5 μm (C).
Figure 3Oral glucose mobilizes enterocyte CLD stores. (A) Study design. Enterocyte CLD and secretory lipid stores were analyzed 6 hours after a high-fat liquid meal and 1 hour after glucose or water ingestion (N = 12 patients per group). (B) Percentage of enterocytes containing CLDs (P = .14, t test). (C) Average CLD number per cell (P = .022, t test). (D) CLD diameter distribution (P = .03, Kolmogorov–Smirnov test) and (E) average total CLD area per cell (P = .11, t test). (F) Amount of lipid within the secretory pathway (includes lipid in ER, Golgi, and secretory vesicles) (P = .29 Fisher exact test).
Demographics of Additional Participants Participating in Aim 2 With Delayed Fasting
| Glucose | Placebo | |
|---|---|---|
| N | 5 | 5 |
| BMI, | 23.8 ± 1.2 | 22.2 ± 1.4 |
| Age, | 33.0 ± 3.8 | 33.6 ± 3.2 |
| Sex | 1 M/4 F | 1 M/4 F |
NOTE. Data are means ± SE for BMI and age.
BMI, body mass index; F, female; M, male.
Figure 4Analysis of enterocyte lipid stores in response to glucose or water ingestion after a delayed fast. (A) Study design. Duodenal biopsy specimens were obtained 10 hours after ingestion of a high-fat liquid meal and 1 hour after ingestion of glucose or water. (B) Percentage of enterocytes containing CLDs (P = .45). (C) Average CLD number per cell (P = .28). (D) CLD diameter distribution and (E) average total CLD area per cell (P = .18). (F) Amount of lipid within the secretory pathway (includes lipid in ER, Golgi, and secretory vesicles) (P = 1, Fisher exact test). Average CLD number and total CLD area per cell were compared with a t test.
Figure 5Comparison of enterocyte lipid stores after different fasting times. (A) Percentage of cells containing CLDs (P = .025) and (B) amount of lipid within the secretory pathway (P = .15, Fisher exact test) in individuals at 6 hours compared with 10 hours after the high-fat liquid meal (and 1 h after water consumption). *P < .05, t test.
Figure 6Proteins present in duodenal biopsy specimens from subjects administered glucose or water after a high-fat liquid meal. Duodenal biopsy specimens were collected 6 hours after lipid and 1 hour after glucose or water ingestion from patients undergoing a diagnostic endoscopy (N = 12 patients per group). (A) Venn diagram of proteins identified in response to glucose or water ingestion. Proteins present in at least 3 samples in 1 group and 0 samples in the other group were considered present in only 1 group. Proteins identified in at least 3 samples in 1 group and at least 1 sample in the other group were considered present in both groups. (B) Percentage of proteins within broad functional groups that were present at either relatively lower (48 total proteins) or relatively higher (86 total proteins) levels in response to glucose compared with water ingestion, as classified based on their biological/molecular functions. Only proteins that were identified in at least 3 samples in both groups and present at relatively different levels (P < .05, t test), or at least 3 samples in 1 group and 0 samples in the other group, were included in this classification. A Database for Annotation, Visualization, and Integrated Discovery search of the 2919 identified proteins resulted in the identification of 270 proteins with GO terms related to lipid metabolism. (C) Percentage of the 270 lipid metabolism-related proteins involved in more specific lipid-related functions. (D) String analysis of the 270 lipid metabolism-related proteins. The thickness of the line represents the strength of evidence of a structural/functional relationship between 2 proteins. Cluster 1 is enriched in proteins involved in TG and phospholipid (PL) synthesis and metabolism, cluster 2 is enriched in proteins involved in lipoprotein metabolism, cluster 3 is enriched in proteins involved in cholesterol/steroid metabolism, and cluster 4 is enriched in proteins involved in FA modification/metabolism/transport. Proteins that were present at relatively different levels in response to glucose compared with water consumption (P < .05, t test) are circled in red. TAG, triacylglycerol.
Proteins Present at Relatively Different Levels in Duodenal Biopsy Specimens From Subjects Administered Glucose or Water After a High-Fat Liquid Meal
| Uniprot accession | Protein name | Gene name | Fold change | Function | |
|---|---|---|---|---|---|
| P05997 | Collagen α-2(V) chain | COL5A2 | -7.4957 | .0030 | Other (extracellular matrix protein) |
| Q5T5C0 | Syntaxin-binding protein 5 | STXBP5 | -6.8628 | 4.72E-22 | Protein folding/transport |
| Q8N2S1 | Latent-transforming growth factor β-binding protein 4 | LTBP4 | -6.7854 | .0002 | Protein folding/transport |
| O14672 | Disintegrin and metalloproteinase domain-containing protein 10 | ADAM10 | -6.7264 | .0010 | Protein metabolism |
| P17480 | Nucleolar transcription factor 1 | UBTF | -6.2100 | .0063 | Transcription/RNA processing/translation |
| Q8N8S7 | Protein enabled homolog | ENAH | -5.7620 | .0007 | Cytoskeleton |
| Q7Z6K5 | Arpin | ARPIN | -5.7573 | 2.02E-19 | Cytoskeleton |
| Q9UQ35 | Serine/arginine repetitive matrix protein 2 | SRRM2 | -5.5687 | .0002 | Transcription/RNA processing/translation |
| P49790 | Nuclear pore complex protein Nup153 | NUP153 | -5.1794 | .0079 | Transcription/RNA processing/translation |
| Q9NRG7 | Epimerase family protein SDR39U1 | SDR39U1 | -4.1142 | 3.26E-28 | Mitochondria/redox |
| P16403 | Histone H1.2 | HIST1H1C | -1.0513 | .0213 | Histone |
| P01860 | Immunoglobulin heavy constant γ 3 | IGHG3 | -1.0063 | .0007 | Immune response |
| P13284 | γ-interferon–inducible lysosomal thiol reductase | IFI30 | -1.0048 | .0116 | Mitochondria/redox |
| P35580 | Myosin-10 | MYH10 | -0.9176 | .0449 | Cytoskeleton |
| P08590 | Myosin light chain 3 | MYL3 | -0.8947 | .0464 | Other (regulation of muscle contraction) |
| Q71UI9 | Histone H2A.V | H2AFV | -0.8933 | .0072 | Histone |
| Q71DI3 | Histone H3.2 | -0.8572 | .0338 | Histone | |
| A0A0B4J1X5 | Immunoglobulin heavy variable 3–74 | IGHV3-74 | -0.8112 | .0076 | Immune response |
| Q99829 | Copine-1 | CPNE1 | -0.7877 | .0101 | Transcription/RNA processing/translation |
| P01780 | Immunoglobulin heavy variable 3–7 | IGHV3-7 | -0.7127 | .0154 | Immune response |
| P42167 | Lamina-associated polypeptide 2; isoforms β/γ | TMPO | -0.6933 | .0453 | Cell–cell adhesion |
| P0CG06 | Immunoglobulin λ constant 2 | IGLC2 | -0.6852 | .0260 | Immune response |
| Q96KA5 | Cleft lip and palate transmembrane protein 1–like protein | CLPTM1L | -0.6539 | .0031 | Other (apoptosis) |
| P01859 | Immunoglobulin heavy constant γ 2 | IGHG2 | -0.6532 | .0234 | Immune response |
| P84243 | Histone H3.3 | H3F3A | -0.6487 | .0236 | Histone |
| Q8IUX7 | Adipocyte enhancer-binding protein 1 | AEBP1 | -0.637 | .0226 | Transcription/RNA processing/translation |
| Q09666 | Neuroblast differentiation-associated protein AHNAK | AHNAK | -0.635 | .0397 | Cell–cell adhesion |
| Q9BY50 | Signal peptidase complex catalytic subunit SEC11C | SEC11C | -0.6182 | .0288 | Protein metabolism |
| P07305 | Histone H1.0 | H1F0 | -0.5824 | .0446 | Histone |
| P01857 | Immunoglobulin heavy constant γ 1 | IGHG1 | -0.5542 | .0206 | Immune response |
| Q9UEW8 | STE20/SPS1-related proline-alanine–rich protein kinase | STK39 SPAK | -0.5436 | .0033 | Kinase |
| P30405 | Peptidyl-prolyl cis-trans isomerase F; mitochondrial | PPIF | -0.5252 | .0168 | Protein folding/transport |
| P56378 | 6.8-kilodalton mitochondrial proteolipid | MP68 | -0.4738 | .0418 | Mitochondria/redox |
| P61758 | Prefoldin subunit 3 | VBP1 | -0.4401 | .0427 | Protein folding/transport |
| Q96L92 | Sorting nexin-27 | SNX27 | -0.427 | .0158 | Protein folding/transport |
| O75323 | Protein NipSnap homolog 2 | GBAS | -0.4059 | .0315 | Mitochondria/redox |
| O75190 | DnaJ homolog subfamily B member 6 | DNAJB6 | -0.3578 | .0384 | Protein folding/transport |
| Q86UP2 | Kinectin | KTN1 | -0.3174 | .0401 | Cell–cell adhesion |
| Q15629 | Translocating chain-associated membrane protein 1 | TRAM1 | -0.3048 | .0452 | Protein folding/transport |
| Q9BWS9 | Chitinase domain-containing protein 1 | CHID1 | -0.2768 | .0223 | Immune response |
| O00186 | Syntaxin-binding protein 3 | STXBP3 | -0.2611 | .0332 | Protein folding/transport |
| Q02543 | 60S ribosomal protein L18a | RPL18A | -0.2238 | .0089 | Transcription/RNA processing/translation |
| P13861 | cAMP-dependent protein kinase type II-α regulatory subunit | PRKAR2A | -0.217 | .0098 | Kinase |
| P84085 | ADP-ribosylation factor 5 | ARF5 | -0.1788 | .0354 | Protein folding/transport |
| P28482 | Mitogen-activated protein kinase 1 | MAPK1 | -0.1528 | .0078 | Kinase |
| P59998 | Actin-related protein 2/3 complex subunit 4 | ARPC4 | -0.1477 | .0141 | Cytoskeleton |
| O15145 | Actin-related protein 2/3 complex subunit 3 | ARPC3 | -0.145 | .0464 | Cytoskeleton |
| Q5VTE0 | Putative elongation factor 1-α–like 3 | EEF1A1P5 | -0.134 | .0151 | Transcription/RNA processing/translation |
| Q8IZ83 | Aldehyde dehydrogenase family 16 member A1 | ALDH16A1 | 0.1539 | .0433 | Mitochondria/redox |
| Q96A33 | Coiled-coil domain-containing protein 47 | CCDC47 | 0.1676 | .0403 | Other (calcium ion homeostasis, ERAD) |
| Q9NPA0 | ER membrane protein complex subunit 7 | EMC7 | 0.1744 | .0474 | Other (carbohydrate binding) |
| Q15417 | Calponin-3 | CNN3 | 0.1993 | .0488 | Cytoskeleton |
| P21281 | V-type proton ATPase subunit B; brain isoform | ATP6V1B2 | 0.2023 | .0460 | Ion transport |
| P48556 | 26S proteasome non-ATPase regulatory subunit 8 | PSMD8 | 0.209 | .0347 | Protein metabolism |
| O14734 | Acyl-coenzyme A thioesterase 8 | ACOT8 | 0.2101 | .0177 | Lipid metabolism |
| Q9NS69 | Mitochondrial import receptor subunit TOM22 homolog | TOMM22 | 0.2105 | .0281 | Mitochondria/redox |
| P11940 | Polyadenylate-binding protein 1 | PABPC1 | 0.2111 | .0441 | Transcription/RNA processing/translation |
| P78344 | Eukaryotic translation initiation factor 4 γ 2 | EIF4G2 | 0.2114 | .0490 | Transcription/RNA processing/translation |
| Q14974 | Importin subunit β-1 | KPNB1 | 0.2177 | .0417 | Protein folding/transport |
| Q13200 | 26S proteasome non-ATPase regulatory subunit 2 | PSMD2 | 0.2182 | .0108 | Protein metabolism |
| O95782 | AP-2 complex subunit α-1 | AP2A1 | 0.219 | .0059 | Protein folding/transport |
| Q93034 | Cullin-5 | CUL5 | 0.2198 | .0058 | Protein metabolism |
| Q9UNZ2 | NSFL1 cofactor p47 | NSFL1C | 0.2214 | .0150 | Protein metabolism |
| Q9BTM9 | Ubiquitin-related modifier 1 | URM1 | 0.2221 | .0047 | Transcription/RNA processing/translation |
| O75436 | Vacuolar protein sorting-associated protein 26A | VPS26A | 0.2305 | .0230 | Protein folding/transport |
| P25788 | Proteasome subunit α type-3 | PSMA3 | 0.2323 | .0358 | Protein metabolism |
| Q9Y2Z0 | Protein SGT1 homolog | SUGT1 | 0.2356 | .0128 | Protein metabolism |
| Q9P2J5 | Leucine-tRNA ligase; cytoplasmic | LARS | 0.2405 | .0207 | Transcription/RNA processing/translation |
| P38606 | V-type proton ATPase catalytic subunit A | ATP6V1A | 0.2418 | .0123 | Ion transport |
| Q93008 | Probable ubiquitin carboxyl-terminal hydrolase FAF-X | USP9X | 0.2423 | .0467 | Protein metabolism |
| P11142 | Heat shock cognate 71-kilodalton protein | HSPA8 | 0.253 | .0051 | Protein folding/transport |
| P55060 | Exportin-2 | CSE1L | 0.2541 | .0385 | Protein folding/transport |
| O75146 | Huntingtin-interacting protein 1–related protein | HIP1R | 0.259 | .0285 | Cytoskeleton |
| O96008 | Mitochondrial import receptor subunit TOM40 homolog | TOMM40 | 0.2593 | .0076 | Mitochondria/redox |
| P15531 | Nucleoside diphosphate kinase A | NME1 | 0.271 | .0213 | Kinase |
| P46734 | Dual-specificity mitogen-activated protein kinase kinase 3 | MAP2K3 | 0.2752 | .0373 | Kinase |
| P28070 | Proteasome subunit β type-4 | PSMB4 | 0.2764 | .0158 | Protein Metabolism |
| O75381 | Peroxisomal membrane protein PEX14 | PEX14 | 0.2803 | .0238 | Protein folding/transport |
| Q9NUQ8 | ATP-binding cassette subfamily F member 3 | ABCF3 | 0.2846 | .0347 | Cell–cell adhesion |
| Q9Y697 | Cysteine desulfurase; mitochondrial | NFS1 | 0.2919 | .0167 | Protein metabolism |
| Q02790 | Peptidyl-prolyl cis-trans isomerase FKBP4 | FKBP4 | 0.2953 | .0477 | Protein folding/transport |
| Q15020 | Squamous cell carcinoma antigen recognized by T cell 3 | SART3 | 0.3007 | .0457 | Transcription/RNA processing/translation |
| Q01813 | ATP-dependent 6-phosphofructokinase; platelet type | PFKP | 0.3087 | .0367 | Carbohydrate metabolism |
| Q5H9R7 | Serine/threonine-protein phosphatase 6 regulatory subunit 3 | PPP6R3 | 0.3154 | .0231 | Protein metabolism |
| O95433 | Activator of 90-kilodalton heat shock protein ATPase homolog 1 | AHSA1 | 0.3177 | .0091 | Protein folding/transport |
| O00231 | 26S proteasome non-ATPase regulatory subunit 11 | PSMD11 | 0.3221 | .0158 | Protein metabolism |
| P31689 | DnaJ homolog subfamily A member 1 | DNAJA1 | 0.3234 | .0479 | Protein folding/transport |
| O75915 | PRA1 family protein 3 | ARL6IP5 | 0.3236 | .0439 | Cytoskeleton |
| Q9ULA0 | Aspartyl aminopeptidase | DNPEP | 0.3283 | .0271 | Protein metabolism |
| Q99757 | Thioredoxin; mitochondrial | TXN2 | 0.3371 | .0343 | Mitochondria/redox |
| Q9NTX5 | Ethylmalonyl-CoA decarboxylase | ECHDC1 | 0.341 | .0450 | Lipid metabolism |
| Q96GK7 | Fumarylacetoacetate hydrolase domain-containing protein 2A | FAHD2A | 0.35 | .0195 | Other (potential hydrolase) |
| Q9Y3D9 | 28S ribosomal protein S23; mitochondrial | MRPS23 | 0.3593 | .0114 | Transcription/RNA processing/translation |
| P23526 | Adenosylhomocysteinase | AHCY | 0.3976 | .0216 | Other (regulation of methylation) |
| P18827 | Syndecan-1 | SDC1 | 0.4174 | .0314 | Other (cell migration) |
| P08621 | U1 small nuclear ribonucleoprotein 70 kilodaltons | SNRNP70 | 0.4216 | .0144 | Transcription/RNA processing/translation |
| P28838 | Cytosol aminopeptidase | LAP3 | 0.4431 | .0436 | Protein metabolism |
| Q9NR19 | Acetyl-coenzyme A synthetase; cytoplasmic | ACSS2 | 0.4512 | .0470 | Lipid metabolism |
| Q8N5G0 | Small integral membrane protein 20 | SMIM20 | 0.4532 | .0296 | Mitochondria/redox |
| P49247 | Ribose-5-phosphate isomerase | RPIA | 0.4698 | .0326 | Carbohydrate metabolism |
| Q9Y333 | U6 snRNA-associated Sm-like protein LSm2 | LSM2 | 0.4741 | .0355 | Transcription/RNA processing/translation |
| Q9H490 | Phosphatidylinositol glycan anchor biosynthesis class U protein | PIGU | 0.4799 | .0487 | Lipid metabolism |
| O75382 | Tripartite motif-containing protein 3 | TRIM3 | 0.485 | .0174 | Immune response |
| Q15125 | 3-β-hydroxysteroid-Δ(8); Δ(7)-isomerase | EBP | 0.4859 | .0413 | Lipid metabolism |
| Q16881 | Thioredoxin reductase 1; cytoplasmic | TXNRD1 | 0.4905 | .0148 | Mitochondria/redox |
| P07108 | Acyl-CoA binding protein | DBI | 0.4917 | .0382 | Lipid metabolism |
| P48637 | Glutathione synthetase | GSS | 0.4944 | .0440 | Other (glutathione synthesis) |
| O76003 | Glutaredoxin-3 | GLRX3 | 0.4953 | .0403 | Mitochondria/redox |
| Q12882 | Dihydropyrimidine dehydrogenase [NADP(+)] | DPYD | 0.5076 | .0165 | Mitochondria/redox |
| Q9NWU5 | 39S ribosomal protein L22; mitochondrial | MRPL22 | 0.526 | .0101 | Transcription/RNA processing/translation |
| Q9NVS9 | Pyridoxine-5'-phosphate oxidase | PNPO | 0.5395 | .0337 | Mitochondria/redox |
| Q9UHY7 | Enolase-phosphatase E1 | ENOPH1 | 0.5544 | .0307 | Protein metabolism |
| P16930 | Fumarylacetoacetase | FAH | 0.5694 | .0236 | Protein metabolism |
| P48506 | Glutamate-cysteine ligase catalytic subunit | GCLC | 0.5745 | .0241 | Mitochondria/redox |
| Q8N983 | 39S ribosomal protein L43; mitochondrial | MRPL43 | 0.5932 | .0266 | Transcription/RNA processing/translation |
| Q9UBM7 | 7-dehydrocholesterol reductase | DHCR7 | 0.6045 | .0283 | Lipid metabolism |
| P48147 | Prolyl endopeptidase | PREP | 0.6099 | .0244 | Protein metabolism |
| P82673 | 28S ribosomal protein S35; mitochondrial | MRPS35 | 0.6118 | .0363 | Transcription/RNA processing/translation |
| Q8WVX9 | Fatty acyl-CoA reductase 1 | FAR1 | 0.6231 | .0223 | Lipid metabolism |
| Q9Y679 | Ancient ubiquitous protein 1 | AUP1 | 0.6292 | .0093 | Protein metabolism |
| P37840 | α-synuclein | SNCA | 0.6332 | .0063 | Mitochondria/redox |
| Q9BRF8 | Serine/threonine-protein phosphatase CPPED1 | CPPED1 | 0.6702 | .0313 | Protein metabolism |
| Q6UX53 | Methyltransferase-like protein 7B | METTL7B | 0.7067 | .0210 | Other (probable methyltransferase) |
| P02792 | Ferritin light chain | FTL | 0.8169 | .0124 | Ion transport |
| P02794 | Ferritin heavy chain | FTH1 | 0.8959 | .0144 | Mitochondria/redox |
| Q9BVL4 | Selenoprotein O | SELENOO | 5.0987 | .0002 | Mitochondria/redox |
| Q9HB07 | UPF0160 protein MYG1; mitochondrial | C12orf10 | 5.9843 | 5.8E-16 | Mitochondria/redox |
| P22090 | 40S ribosomal protein S4 | RPS4Y1 | 6.7537 | .0018 | Transcription/RNA processing/translation |
| Q9P003 | Protein cornichon homolog 4 | CNIH4 | 7.1618 | 1.74E-15 | Protein folding/transport |
| O60938 | Keratocan | KERA | 7.4582 | .0050 | Other (keratan sulfate metabolism/cornea development) |
| Q9C0D9 | Ethanolaminephosphotransferase 1 | SELENOI | 7.4638 | .0005 | Lipid metabolism |
| Q96HV5 | Transmembrane protein 41A | TMEM41A | 7.5997 | .0023 | Other (transmembrane protein) |
| P62306 | Small nuclear ribonucleoprotein F | SNRPF | 7.7847 | 3.21E-17 | Transcription/RNA processing/translation |
| Q8NDA2 | Hemicentin-2 | HMCN2 | 11.5204 | 3.81E-16 | Immune response |
NOTE. Proteins identified in at least 3 samples in both groups, or at least 3 samples in 1 group and 0 samples in the other group, were compared. Proteins present at significantly different levels within the 2 treatment groups (P < .05, t test) are shown. Average fold change of proteins in response to glucose relative to water consumption are presented. Numbers in the “Fold change” column represent how much higher (or lower if negative) the protein levels were in the glucose group compared with the water group. Proteins are listed in descending order according to relative fold change, with negative fold change values indicating relative down-regulation by glucose (listed at the top of the table) followed by those up-regulated by glucose indicated by a positive fold change (with greatest positive fold change listed at the bottom of table).
ADP, adenosine diphosphate; ATP, adenosine triphosphate; ATPase, adenosine triphosphatase; cAMP, cyclic adenosine monophosphate; ERAD, endoplasmic-reticulum-associated protein degradation; NADP, nicotinamide adenine dinucleotide phosphate; redox, reduction-oxidation; tRNA, transfer ribonucleic acid.
Only identified in response to water.
Only identified in response to glucose.
GO Terms Associated With Lipid Metabolism-Related Proteins Present in Duodenal Biopsy Specimens 6 Hours After a High-Fat Liquid Meal
| Cholesterol/steroid metabolism | |
| UP_KEYWORDS | Cholesterol biosynthesis |
| GOTERM_BP_DIRECT | Cholesterol biosynthetic process |
| UP_KEYWORDS | Cholesterol metabolism |
| UP_KEYWORDS | Steroid biosynthesis |
| KEGG_PATHWAY | Steroid hormone biosynthesis |
| UP_KEYWORDS | Steroid metabolism |
| UP_KEYWORDS | Sterol biosynthesis |
| GOTERM_MF_DIRECT | Sterol esterase activity |
| UP_KEYWORDS | Sterol metabolism |
| CLD storage/metabolism | |
| GOTERM_CC_DIRECT | Lipid droplet |
| GPTERM_BP_DIRECT | Lipid storage |
| CM trafficking | |
| GOTERM_CC_DIRECT | COPII vesicle coat |
| GOTERM_CC_DIRECT | ER to Golgi transport vesicle membrane |
| GOTERM_MF_DIRECT | SNARE binding |
| GOTERM_CC_DIRECT | SNARE complex |
| GOTERM_BP_DIRECT | Vesicle fusion |
| Eicosanoid metabolism | |
| UP_KEYWORDS | Leukotriene biosynthesis |
| GOTERM_BP_DIRECT | Leukotriene biosynthetic process |
| GOTERM_BP_DIRECT | Leukotriene metabolic process |
| GOTERM_BP_DIRECT | Prostaglandin biosynthetic process |
| FA modification/metabolism/transport | |
| GOTERM_BP_DIRECT | Fatty acid biosynthetic process |
| GOTERM_MF_DIRECT | 3-hydroxyacyl-CoA dehydrogenase activity |
| INTERPRO | 3-hydroxyacyl-CoA dehydrogenase, conserved site |
| INTERPRO | 3-hydroxyacyl-CoA dehydrogenase, C-terminal |
| INTERPRO | 3-hydroxyacyl-CoA dehydrogenase, NAD binding |
| GOTERM_MF_DIRECT | Acyl-CoA dehydrogenase activity |
| INTERPRO | Acyl-CoA dehydrogenase, conserved site |
| INTERPRO | Acyl-CoA dehydrogenase/oxidase |
| INTERPRO | Acyl-CoA dehydrogenase/oxidase C-terminal |
| INTERPRO | Acyl-CoA dehydrogenase/oxidase, N-terminal |
| GOTERM_MF_DIRECT | Acyl-CoA hydrolase activity |
| GOTERM_BP_DIRECT | Acyl-CoA metabolic process |
| INTERPRO | Acyl-CoA oxidase |
| PIR_SUPERFAMILY | Acyl-CoA oxidase |
| INTERPRO | Acyl-CoA oxidase, C-terminal |
| INTERPRO | Acyl-CoA oxidase/dehydrogenase, central domain |
| INTERPRO | AMP binding, conserved site |
| INTERPRO | AMP-dependent synthetase/ligase |
| GOTERM_MF_DIRECT | Decanoate-CoA ligase activity |
| INTERPRO | Domain of unknown function DUF4009 |
| GOTERM_BP_DIRECT | Fatty acid β-oxidation |
| GOTERM_BP_DIRECT | Fatty acid β-oxidation using acyl-CoA dehydrogenase |
| GOTERM_BP_DIRECT | Fatty acid β-oxidation using acyl-CoA oxidase |
| KEGG_PATHWAY | Fatty acid biosynthesis |
| KEGG_PATHWAY | Fatty acid degradation |
| GOTERM_BP_DIRECT | Fatty acid elongation |
| GOTERM_BP_DIRECT | Fatty acid metabolic process |
| KEGG_PATHWAY | Fatty acid metabolism |
| GOTERM_BP_DIRECT | Fatty acid transport |
| GOTERM_MF_DIRECT | Fatty-acyl-CoA binding |
| GOTERM_BP_DIRECT | Fatty-acyl-CoA biosynthetic process |
| GOTERM_BP_DIRECT | Lipid homeostasis |
| GOTERM_BP_DIRECT | Long-chain fatty acid import |
| GOTERM_BP_DIRECT | Long-chain fatty acid metabolic process |
| GOTERM_MF_DIRECT | Long-chain fatty acid-CoA ligase activity |
| GOTERM_BP_DIRECT | Long-chain fatty-acyl-CoA biosynthetic process |
| GOTERM_BP_DIRECT | Long-chain fatty-acyl-CoA metabolic process |
| GOTERM_MF_DIRECT | Very long-chain fatty acid-CoA ligase activity |
| Lipid binding proteins | |
| INTERPRO | Acyl-CoA-binding protein, ACBP |
| INTERPRO | Acyl-CoA-binding protein, ACBP, conserved site |
| INTERPRO | Cytosolic fatty-acid binding |
| UP_SEQ_FEATURE | Domain: ACB |
| INTERPRO | Lipocalin/cytosolic fatty-acid binding protein domain |
| INTERPRO | Lipocalin/cytosolic fatty-acid binding protein domain |
| GOTERM_MF_DIRECT | Retinal binding |
| GOTERM_MF_DIRECT | Retinoic acid binding |
| GOTERM_MF_DIRECT | Retinoid binding |
| GOTERM_MF_DIRECT | Retinol binding |
| UP_KEYWORDS | Retinol binding |
| UP_KEYWORDS | Retinol binding |
| UP_KEYWORDS | Vitamin A |
| Lipoprotein metabolism | |
| INTERPRO | Apolipoprotein A1/A4/E |
| GOTERM_MF_DIRECT | Cholesterol binding |
| GOTERM_BP_DIRECT | Cholesterol efflux |
| GOTERM_BP_DIRECT | Cholesterol homeostasis |
| GOTERM_BP_DIRECT | Cholesterol metabolic process |
| GOTERM_MF_DIRECT | Cholesterol transporter activity |
| GOTERM_CC_DIRECT | Chylomicron |
| UP_KEYWORDS | Chylomicron |
| GOTERM_BP_DIRECT | Chylomicron remnant clearance |
| UP_KEYWORDS | HDL |
| GOTERM_CC_DIRECT | High-density lipoprotein particle |
| GOTERM_BP_DIRECT | High-density lipoprotein particle assembly |
| GOTERM_BP_DIRECT | High-density lipoprotein particle clearance |
| GOTERM_MF_DIRECT | High-density lipoprotein particle receptor binding |
| GOTERM_BP_DIRECT | High-density lipoprotein particle remodeling |
| GOTERM_CC_DIRECT | Intermediate-density lipoprotein particle |
| UP_KEYWORDS | LDL |
| SMART | LDLa |
| GOTERM_MF_DIRECT | Lipase inhibitor activity |
| UP_KEYWORDS | Lipid transport |
| GOTERM_BP_DIRECT | Lipid transport |
| GOTERM_MF_DIRECT | Lipid transporter activity |
| GOTERM_BP_DIRECT | Lipoprotein biosynthetic process |
| GOTERM_BP_DIRECT | Lipoprotein metabolic process |
| INTERPRO | LDL-receptor class A repeat |
| INTERPRO | LDL-receptor class A, conserved site |
| GOTERM_CC_DIRECT | LDL particle |
| GOTERM_BP_DIRECT | LDL particle remodeling |
| GOTERM_BP_DIRECT | Negative regulation of cholesterol transport |
| GOTERM_BP_DIRECT | Negative regulation of lipid catabolic process |
| GOTERM_BP_DIRECT | Negative regulation of lipid metabolic process |
| GOTERM_BP_DIRECT | Negative regulation of receptor-mediated endocytosis |
| GOTERM_BP_DIRECT | Negative regulation of VLDL particle clearance |
| GOTERM_BP_DIRECT | Negative regulation of VLDL particle remodeling |
| GOTERM_BP_DIRECT | Neuron projection regeneration |
| GOTERM_MF_DIRECT | Phosphatidylcholine binding |
| GOTERM_MF_DIRECT | Phosphatidylcholine-sterol O-acyltransferase activator activity |
| GOTERM_BP_DIRECT | Phospholipid efflux |
| GOTERM_BP_DIRECT | Positive regulation of cholesterol esterification |
| GOTERM_BP_DIRECT | Positive regulation of fatty acid biosynthetic process |
| GOTERM_BP_DIRECT | Positive regulation of lipoprotein lipase activity |
| GOTERM_BP_DIRECT | Positive regulation of triglyceride catabolic process |
| GOTERM_BP_DIRECT | Regulation of Cdc42 protein signal transduction |
| GOTERM_BP_DIRECT | Regulation of intestinal cholesterol absorption |
| GOTERM_BP_DIRECT | Reverse cholesterol transport |
| GOTERM_CC_DIRECT | Spherical HDL particle |
| GOTERM_BP_DIRECT | Triglyceride homeostasis |
| GOTERM_CC_DIRECT | VLDL particle |
| GOTERM_BP_DIRECT | VLDL particle remodeling |
| UP_KEYWORDS | VLDL |
| TAG and PL synthesis/metabolism | |
| GOTERM_MF_DIRECT | 1-acylglycerol-3-phosphate O-acyltransferase activity |
| GOTERM_BP_DIRECT | Acylglycerol catabolic process |
| GOTERM_MF_DIRECT | Acylglycerol lipase activity |
| GOTERM_BP_DIRECT | CDP-diacylglycerol biosynthetic process |
| GOTERM_BP_DIRECT | Ether lipid biosynthetic process |
| GOTERM_BP_DIRECT | Glycerolipid metabolic process |
| GOTERM_BP_DIRECT | Glycerophospholipid biosynthetic process |
| GOTERM_BP_DIRECT | Glycerophospholipid catabolic process |
| KEGG_PATHWAY | Glycerophospholipid metabolism |
| GOTERM_BP_DIRECT | GPI anchor biosynthetic process |
| GOTERM_MF_DIRECT | Lysophospholipase activity |
| GOTERM_BP_DIRECT | Phosphatidic acid biosynthetic process |
| UP_KEYWORDS | Phospholipid biosynthesis |
| GOTERM_BP_DIRECT | Phospholipid biosynthetic process |
| GOTERM_BP_DIRECT | Phospholipid catabolic process |
| GOTERM_BP_DIRECT | Phospholipid metabolic process |
| UP_KEYWORDS | Phospholipid metabolism |
| GOTERM_BP_DIRECT | Phospholipid transport |
| INTERPRO | Phospholipid/glycerol acyltransferase |
| SMART | PlsC |
| UP_SEQ_FEATURE | Short sequence motif: HXXXXD motif |
| GOTERM_BP_DIRECT | Triglyceride biosynthetic process |
| GOTERM_MF_DIRECT | Triglyceride lipase activity |
ABCP, Acyl-CoA-binding protein; ACB, acyl-CoA-binding; AMP, Adenosine monophosphate; CDP, Cytidine Diphosphate; COPII, cytoplasmic coat protein complex II; GPI, glycosylphosphatidylinositol; HDL, high-density lipoprotein; LDL, low-density lipoprotein; LDLa, low-density lipoprotein receptor domain class A; NAD, Nicotinamide adenine dinucleotide.
Lipid Metabolism Proteins Present at Relatively Different Levels in Duodenal Biopsy Specimens From Subjects Administered Glucose or Water After a High-Fat Liquid Meal
| Uniprot accession | Protein name | Gene name | Fold change | Lipid metabolism-related function | |
|---|---|---|---|---|---|
| O14734 | Acyl-coenzyme A thioesterase 8 | ACOT8 | 0.2101 | .0177 | FA modification/ metabolism/transport |
| Q9NTX5 | Ethylmalonyl-CoA decarboxylase | ECHDC1 | 0.341 | .0450 | FA modification/ metabolism/transport |
| Q9NR19 | Acetyl-coenzyme A synthetase; cytoplasmic | ACSS2 | 0.4512 | .0470 | FA modification/ metabolism/transport |
| Q9H490 | Phosphatidylinositol glycan anchor biosynthesis class U protein | PIGU | 0.4799 | .0487 | TAG and PL synthesis/metabolism |
| Q15125 | 3-β-hydroxysteroid-Δ(8); Δ(7)-isomerase | EBP | 0.4859 | .0413 | Cholesterol/steroid metabolism |
| P07108 | Acyl-CoA-binding protein | DBI | 0.4917 | .0382 | Lipid binding protein |
| Q9UBM7 | 7-dehydrocholesterol reductase | DHCR7 | 0.6045 | .0283 | Cholesterol/steroid metabolism |
| Q8WVX9 | Fatty acyl-CoA reductase 1 | FAR1 | 0.6231 | .0223 | FA modification/metabolism/transport |
| Q9C0D9 | Ethanolaminephosphotransferase 1 | SELENOI | 7.4638 | .0005 | TAG and PL synthesis/metabolism |
NOTE. Proteins known to play a role in lipid metabolism were identified based on GO terms. Relative levels of proteins identified in at least 3 duodenal biopsy samples per group, or identified in at least 3 samples in 1 group and 0 samples in the other group, were compared. Proteins present at significantly different levels within the 2 treatment groups (P < .05, t test) are shown. Average fold changes of proteins in response to glucose relative to water consumption are presented. Numbers in the “Fold change” column represent how much higher (or lower if negative) the protein levels were in the glucose group compared with the water group. All of these lipid metabolism proteins were up-regulated by glucose relative to water consumption and are listed in ascending order of magnitude of fold change.
PL, phospholipid; TAG, triacylglycerol.
Only identified in response to glucose.
Figure 7Proteins present in intestinal biopsy specimens from subjects administered glucose or water after an overnight fast after the consumption of a high-fat liquid meal. Duodenal biopsy specimens were collected 10 hours after lipid and 1 hour after glucose or water ingestion from patients undergoing a diagnostic endoscopy (n = 5 patients per group). (A) Venn diagram of proteins identified in response to glucose or water ingestion. Proteins present in at least 3 samples in 1 group and 0 samples in the other group were considered present in only 1 group. Proteins identified in at least 3 samples in 1 group and at least 1 sample in the other group were considered present in both groups. (B) Percentage of proteins within broad functional groups that were present at either relatively lower (48 total proteins) or relatively higher (48 total proteins) levels in response to glucose compared with water ingestion, as classified based on their biological/molecular functions. Only proteins that were identified in at least 3 samples in both groups and present at relatively different levels (P < .05, t test), or at least 3 samples in 1 group and 0 samples in the other group, were included in this classification. A Database for Annotation, Visualization, and Integrated Discovery search of the 1683 identified proteins resulted in the identification of 186 proteins with GO terms related to lipid metabolism. (C) Percentage of the 186 lipid metabolism-related proteins involved in more specific lipid-related functions. (D) String analysis of the 186 lipid metabolism-related proteins. The thickness of the line represents the strength of evidence of a structural/functional relationship between 2 proteins. Cluster 1 is enriched in proteins involved in FA modification/metabolism/transport, cluster 2 is enriched in proteins involved in lipoprotein metabolism, cluster 3 is enriched in proteins involved in TG and phospholipid (PL) synthesis and metabolism, and cluster 4 is enriched in proteins involved in cholesterol/steroid metabolism. Proteins that were present at relatively different levels (P < .05, t test) in response to glucose compared with water ingestion are circled in red.
Proteins Present at Relatively Different Levels in Duodenal Biopsy Specimens From Subjects Administered Glucose or Water After an Overnight Fast After the Consumption of a High-Fat Liquid Meal
| Uniprot accession | Protein name | Gene name | Fold change | Function | |
|---|---|---|---|---|---|
| P02760 | Protein AMBP | AMBP | -10.9586 | 2.33E-05 | Protein metabolism |
| P35613 | Basigin | BSG | -7.4781 | 1.28E-05 | Other (extracellular matrix organization) |
| P42025 | β-centractin | ACTR1B | -6.6073 | .0003 | Cytoskeleton |
| Q96GA7 | Serine dehydratase-like | SDSL | -6.4238 | 4.13E-05 | Protein metabolism |
| Q9NP81 | Serine-tRNA ligase; mitochondrial | SARS2 | -6.4093 | .0001 | Transcription/RNA processing/translation |
| Q07837 | Neutral and basic amino acid transport protein rBAT | SLC3A1 | -5.9686 | .0001 | Protein folding/transport |
| Q9NW15 | Anoctamin-10 | ANO10 | -5.8317 | 6.88E-13 | Ion transport |
| P33897 | ATP-binding cassette subfamily D member 1 | ABCD1 | -5.296 | .0011 | Lipid metabolism |
| Q9Y320 | Thioredoxin-related transmembrane protein 2 | TMX2 | -4.7109 | .0055 | Mitochondria/redox |
| P62899 | 60S ribosomal protein L31 | RPL31 | -1.4463 | .0016 | Transcription/RNA processing/translation |
| P26583 | High-mobility group protein B2 | HMGB2 | -1.3698 | .0205 | Transcription/RNA processing/translation |
| P62841 | 40S ribosomal protein S15 | RPS15 | -1.339 | .0217 | Transcription/RNA processing/translation |
| O43895 | Xaa-Pro aminopeptidase 2 | XPNPEP2 | -1.2009 | .0161 | Protein metabolism |
| Q00688 | Peptidyl-prolyl cis-trans isomerase FKBP3 | FKBP3 | -1.1226 | .0486 | Protein folding/transport |
| P62424 | 60S ribosomal protein L7a | RPL7A | -1.0994 | .0165 | Transcription/RNA processing/translation |
| P99999 | Cytochrome c | CYCS | -1.0634 | .0237 | Mitochondria/redox |
| P14927 | Cytochrome b-c1 complex subunit 7 | UQCRB | -0.9939 | .0352 | Mitochondria/redox |
| O43181 | NADH dehydrogenase (ubiquinone) iron-sulfur protein 4; mitochondrial | NDUFS4 | -0.9391 | .0220 | Mitochondria/redox |
| P46783 | 40S ribosomal protein S10 | RPS10 | -0.8004 | .0412 | Transcription/RNA processing/translation |
| Q9UNX3 | 60S ribosomal protein L26-like 1 | RPL26L1 | -0.795 | .0441 | Transcription/RNA processing/translation |
| P62241 | 40S ribosomal protein S8 | RPS8 | -0.7606 | .0362 | Transcription/RNA processing/translation |
| Q00013 | 55-kilodalton erythrocyte membrane protein | MPP1 | -0.6858 | .0323 | Immune response |
| Q9Y3U8 | 60S ribosomal protein L36 | RPL36 | -0.6824 | .0149 | Transcription/RNA processing/translation |
| P04792 | Heat shock protein β-1 | HSPB1 | -0.6317 | .0415 | Protein folding/transport |
| P20674 | Cytochrome c oxidase subunit 5A; mitochondrial | COX5A | -0.6209 | .0430 | Mitochondria/redox |
| Q9BXW7 | Haloacid dehalogenase-like hydrolase domain-containing 5 | HDHD5 | -0.5832 | .0196 | Lipid metabolism |
| P62081 | 40S ribosomal protein S7 | RPS7 | -0.5799 | .0368 | Transcription/RNA processing/translation |
| Q92520 | Protein FAM3C | FAM3C | -0.5691 | .0467 | Other (cytokine activity) |
| Q86VU5 | Catechol O-methyltransferase domain-containing protein 1 | COMTD1 | -0.5488 | .0242 | Other (putative O-methyltransferase) |
| Q15233 | Non-POU domain-containing octamer-binding protein | NONO | -0.5382 | .0131 | Transcription/RNA processing/translation |
| P08708 | 40S ribosomal protein S17 | RPS17 | -0.5285 | .0429 | Transcription/RNA processing/translation |
| Q5SSJ5 | Heterochromatin protein 1-binding protein 3 | HP1BP3 | -0.5232 | .0430 | Transcription/RNA processing/translation |
| P26232 | Catenin α-2 | CTNNA2 | -0.5041 | .0231 | Cytoskeleton |
| O60825 | 6-phosphofructo-2-kinase/fructose-2;6-bisphosphatase 2 | PFKFB2 | -0.4706 | .0010 | Carbohydrate metabolism |
| Q9BPW8 | Protein NipSnap homolog 1 | NIPSNAP1 | -0.4247 | .0273 | Mitochondria/redox |
| Q9BUJ2 | Heterogeneous nuclear ribonucleoprotein U-like protein 1 | HNRNPUL1 | -0.4204 | .0322 | Transcription/RNA processing/translation |
| P51148 | Ras-related protein Rab-5C | RAB5C | -0.4166 | .0228 | Protein folding/transport |
| A0AV96 | RNA-binding protein 47 | RBM47 | -0.4047 | .0211 | Other (RNA binding) |
| P26373 | 60S ribosomal protein L13 | RPL13 | -0.3879 | .0418 | Transcription/RNA processing/translation |
| Q9Y6N9 | Harmonin | USH1C | -0.3863 | .0445 | Other (brush-border assembly, regulation of microvillus length) |
| Q5IFJ7 | 60S ribosomal protein L9 | RPL9 | -0.3797 | .0444 | Transcription/RNA processing/translation |
| P36543 | V-type proton ATPase subunit E 1 | ATP6V1E1 | -0.3609 | .0298 | Mitochondria/redox |
| P15880 | 40S ribosomal protein S2 | RPS2 | -0.313 | .0103 | Transcription/RNA processing/translation |
| Q00169 | Phosphatidylinositol transfer protein α isoform | PITPNA | -0.2974 | .0315 | Lipid metabolism |
| Q9Y4W6 | AFG3-like protein 2 | AFG3L2 | -0.2882 | .0427 | Protein metabolism |
| Q9UBQ0 | Vacuolar protein sorting-associated protein 29 | VPS29 | -0.283 | .0334 | Protein folding/transport |
| Q13232 | Nucleoside diphosphate kinase 3 | NME3 | -0.2655 | .0405 | Other (nucleotide triphosphate synthesis) |
| P61106 | Ras-related protein Rab-14 | RAB14 | -0.2269 | .0176 | Protein folding/transport |
| Q8NEV1 | Casein kinase II subunit α 3 | CSNK2A3 | 0.1846 | .0033 | Protein metabolism |
| Q9BPX5 | Actin-related protein 2/3 complex subunit 5-like protein | ARPC5L | 0.2192 | .0094 | Transcription/RNA processing/translation |
| Q7L5N1 | COP9 signalosome complex subunit 6 | COPS6 | 0.2227 | .0237 | Protein metabolism |
| O60313 | Dynamin-like 120-kilodalton protein; mitochondrial | OPA1 | 0.2682 | .0189 | Mitochondria/redox |
| Q15029 | 116-kilodalton U5 small nuclear ribonucleoprotein component | EFTUD2 | 0.2702 | .0022 | Transcription/RNA processing/translation |
| Q92841 | Probable ATP-dependent RNA helicase DDX17 | DDX17 | 0.2774 | .0277 | Transcription/RNA processing/translation |
| Q9Y265 | RuvB-like 1 | RUVBL1 | 0.2863 | .0143 | Transcription/RNA processing/translation |
| Q08211 | ATP-dependent RNA helicase A | DHX9 | 0.2969 | .0021 | Transcription/RNA processing/translation |
| P56192 | Methionine-tRNA ligase; cytoplasmic | MARS | 0.2985 | .0005 | Transcription/RNA processing/translation |
| O00303 | Eukaryotic translation initiation factor 3 subunit F | EIF3F | 0.3017 | .0358 | Transcription/RNA processing/translation |
| P50990 | T-complex protein 1 subunit theta | CCT8 | 0.3103 | .0462 | Protein folding/transport |
| Q13363 | C-terminal-binding protein 1 | CTBP1 | 0.3117 | .0193 | Transcription/RNA processing/translation |
| O76094 | Signal recognition particle subunit SRP72 | SRP72 | 0.317 | .0088 | Transcription/RNA processing/translation |
| P50851 | Lipopolysaccharide-responsive and beige-like anchor protein | LRBA | 0.3239 | .0462 | Immune response |
| Q13409 | Cytoplasmic dynein 1 intermediate chain 2 | DYNC1I2 | 0.3304 | .0080 | Cytoskeleton |
| Q6P2Q9 | Pre–messenger RNA-processing-splicing factor 8 | PRPF8 | 0.3428 | .0263 | Transcription/RNA processing/translation |
| P46940 | Ras GTPase-activating-like protein IQGAP1 | IQGAP1 | 0.3464 | .0427 | Other (cellular response to calcium and growth factor stimuli) |
| O95782 | AP-2 complex subunit α-1 | AP2A1 | 0.3545 | .0240 | Protein folding/transport |
| P17987 | T-complex protein 1 subunit α | TCP1 | 0.3631 | .0078 | Protein folding/transport |
| Q14152 | Eukaryotic translation initiation factor 3 subunit A | EIF3A | 0.3778 | .0231 | Transcription/RNA processing/translation |
| O95394 | Phosphoacetylglucosamine mutase | PGM3 | 0.3795 | .0164 | Carbohydrate metabolism |
| O43143 | Pre–messenger RNA-splicing factor ATP-dependent RNA helicase DHX15 | DHX15 | 0.3864 | .0448 | Transcription/RNA processing/translation |
| Q9P2J5 | Leucine-tRNA ligase; cytoplasmic | LARS | 0.3966 | .0183 | Transcription/RNA processing/translation |
| P13010 | X-ray repair cross-complementing protein 5 | XRCC5 | 0.4032 | .0284 | Transcription/RNA processing/translation |
| O75643 | U5 small nuclear ribonucleoprotein 200-kilodalton helicase | SNRNP200 | 0.404 | .0136 | Transcription/RNA processing/translation |
| Q53EL6 | Programmed cell death protein 4 | PDCD4 | 0.4079 | .0175 | Transcription/RNA processing/translation |
| Q8N163 | Cell cycle and apoptosis regulator protein 2 | CCAR2 | 0.4108 | .0094 | Transcription/RNA processing/translation |
| Q15008 | 26S proteasome non-ATPase regulatory subunit 6 | PSMD6 | 0.4158 | .0475 | Protein metabolism |
| P00325 | Alcohol dehydrogenase 1B | ADH1B | 0.427 | .0394 | Mitochondria/redox |
| P07478 | Trypsin-2 | PRSS2 | 0.4359 | .0328 | Protein metabolism |
| Q9Y262 | Eukaryotic translation initiation factor 3 subunit L | EIF3L | 0.4529 | .0493 | Transcription/RNA processing/translation |
| Q93009 | Ubiquitin carboxyl-terminal hydrolase 7 | USP7 | 0.455 | .0294 | Protein metabolism |
| Q86VP6 | Cullin-associated NEDD8-dissociated protein 1 | CAND1 | 0.4561 | .0490 | Protein metabolism |
| O00410 | Importin-5 | IPO5 | 0.4754 | .0232 | Protein folding/transport |
| Q15393 | Splicing factor 3B subunit 3 | SF3B3 | 0.4946 | .0349 | Transcription/RNA processing/translation |
| P07437 | Tubulin β chain | TUBB | 0.5145 | .0031 | Cytoskeleton |
| P55011 | Solute carrier family 12 member 2 | SLC12A2 | 0.5237 | .0405 | Ion transport |
| Q14974 | Importin subunit β-1 | KPNB1 | 0.5474 | .0326 | Protein folding/transport |
| P0DOX7 | Immunoglobulin κ light chain | 0.5546 | .0356 | Immune response | |
| P68363 | Tubulin α-1B chain | TUBA1B | 0.5982 | .0022 | Cytoskeleton |
| P55786 | Puromycin-sensitive aminopeptidase | NPEPPS | 0.5983 | .0495 | Protein metabolism |
| P11766 | Alcohol dehydrogenase class-3 | ADH5 | 0.5992 | .0360 | Mitochondria/redox |
| P05451 | Lithostathine-1-α | REG1A | 0.6105 | .0107 | Other (positive regulator of cell proliferation, carbohydrate binding) |
| Q9BUF5 | Tubulin β-6 chain | TUBB6 | 0.6265 | .0332 | Cytoskeleton |
| P01619 | Immunoglobulin κ variable 3–20 | IGKV3-20 | 1.0274 | .0314 | Immune response |
| O00534 | von Willebrand factor A domain-containing protein 5A | VWA5A | 1.1874 | .0346 | Other (may act as tumor suppressor) |
| P08311 | Cathepsin G | CTSG | 1.8843 | .0438 | Protein metabolism |
| Q8IV08 | Phospholipase D3 | PLD3 | 5.5249 | 1.31E-08 | Lipid metabolism |
NOTE. Duodenal biopsy samples were collected 10 hours after lipid and 1 hour after glucose or water ingestion from patients undergoing a diagnostic endoscopy (n = 5 patients per group). Proteins that were identified in at least 3 samples in both groups and present at relatively different levels (P < .05, t test), or at least 3 samples in 1 group and 0 samples in the other group, are shown. Average fold changes of proteins in response to glucose relative to water consumption are presented. Numbers in the “Fold change” column represent how much higher (or lower if negative) the protein levels were in the glucose group compared with the water group.
AMBP, alpha-1-microglobulin/bikunin precursor; AP-2, adaptor protein complex 2; ATP, adenosine triphosphate; ATPase, adenosine triphosphatase; GTPase, guanosine triphosphatase; rBAT, neutral and basic amino acid transport protein; redox, reduction-oxidation; tRNA, transfer ribonucleic acid.
Only identified in response to water.
Only identified in response to glucose.
GO Terms Associated With Lipid Metabolism-Related Proteins Present in Duodenal Biopsy Specimens 10 Hours After a High-Fat Liquid Meal
| Cholesterol/steroid metabolism | |
| UP_KEYWORDS | Cholesterol biosynthesis |
| GOTERM_BP_DIRECT | Cholesterol biosynthetic process |
| UP_KEYWORDS | Cholesterol metabolism |
| GOTERM_BP_DIRECT | Isoprenoid biosynthetic process |
| UP_KEYWORDS | Steroid biosynthesis |
| KEGG_PATHWAY | Steroid hormone biosynthesis |
| GOTERM_BP_DIRECT | Steroid metabolic process |
| UP_KEYWORDS | Steroid metabolism |
| UP_KEYWORDS | Sterol biosynthesis |
| GOTERM_MF_DIRECT | Sterol esterase activity |
| UP_KEYWORDS | Sterol metabolism |
| CLD storage/metabolism | |
| GOTERM_CC_DIRECT | Lipid droplet |
| GOTERM_BP_DIRECT | Lipid storage |
| CM trafficking | |
| GOTERM_CC_DIRECT | ER to Golgi transport vesicle membrane |
| Eicosanoid metabolism | |
| GOTERM_MF_DIRECT | Arachidonic acid epoxygenase activity |
| KEGG_PATHWAY | Arachidonic acid metabolism |
| GOTERM_BP_DIRECT | Cyclooxygenase pathway |
| GOTERM_BP_DIRECT | Epoxygenase P450 pathway |
| GOTERM_BP_DIRECT | Leukotriene metabolic process |
| UP_KEYWORDS | Prostaglandin biosynthesis |
| GOTERM_BP_DIRECT | Prostaglandin biosynthetic process |
| UP_KEYWORDS | Prostaglandin metabolism |
| GOTERM_MF_DIRECT | Steroid hydroxylase activity |
| FA modification/metabolism/transport | |
| GOTERM_MF_DIRECT | Acyl-CoA dehydrogenase activity |
| INTERPRO | Acyl-CoA dehydrogenase, conserved site |
| INTERPRO | Acyl-CoA dehydrogenase/oxidase |
| INTERPRO | Acyl-CoA dehydrogenase/oxidase, C-terminal |
| INTERPRO | Acyl-CoA dehydrogenase/oxidase, N-terminal |
| GOTERM_MF_DIRECT | Acyl-CoA hydrolase activity |
| GOTERM_BP_DIRECT | Acyl-CoA metabolic process |
| INTERPRO | Acyl-CoA oxidase/dehydrogenase, central domain |
| INTERPRO | Acyltransferase ChoActase/COT/CPT |
| INTERPRO | AMP binding, conserved site |
| INTERPRO | AMP-dependent synthetase/ligase |
| UP_SEQ_FEATURE | Binding site: carnitine |
| GOTERM_MF_DIRECT | Decanoate-CoA ligase activity |
| INTERPRO | Domain of unknown function DUF4009 |
| GOTERM_BP_DIRECT | Fatty acid α-oxidation |
| GOTERM_BP_DIRECT | Fatty acid β-oxidation |
| GOTERM_BP_DIRECT | Fatty acid β-oxidation using acyl-CoA dehydrogenase |
| UP_KEYWORDS | Fatty acid biosynthesis |
| KEGG_PATHWAY | Fatty acid biosynthesis |
| KEGG_PATHWAY | Fatty acid degradation |
| UP_KEYWORDS | Fatty acid metabolism |
| KEGG_PATHWAY | Fatty acid metabolism |
| GOTERM_MF_DIRECT | Flavin adenine dinucleotide binding |
| GOTERM_MF_DIRECT | Hydroxyacyl-CoA dehydrogenase activity |
| GOTERM_BP_DIRECT | Lipid homeostasis |
| GOTERM_BP_DIRECT | Long-chain fatty acid import |
| GOTERM_BP_DIRECT | Long-chain fatty acid metabolic process |
| GOTERM_MF_DIRECT | Long-chain fatty acid–CoA ligase activity |
| GOTERM_BP_DIRECT | Negative regulation of fatty acid metabolic process |
| GOTERM_MF_DIRECT | Oxidoreductase activity, acting on the CH-CH group of donors |
| GOTERM_MF_DIRECT | Oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor |
| GOTERM_MF_DIRECT | Palmitoyl-CoA hydrolase activity |
| UP_SEQ_FEATURE | Region of interest: coenzyme A binding |
| GOTERM_MF_DIRECT | Transferase activity, transferring acyl groups |
| GOTERM_MF_DIRECT | Very-long-chain fatty acid–CoA ligase activity |
| Lipid binding proteins | |
| INTERPRO | Acyl-CoA binding protein, ACBP |
| INTERPRO | Acyl-CoA binding protein, ACBP, conserved site |
| INTERPRO | Cytosolic fatty acid binding |
| UP_SEQ_FEATURE | Domain: ACB |
| GOTERM_MF_DIRECT | Fatty-acyl-CoA binding |
| INTERPRO | Lipocalin/cytosolic fatty acid binding protein domain |
| GOTERM_MF_DIRECT | Retinoic acid binding |
| Lipoprotein metabolism | |
| INTERPRO | Apolipoprotein A1/A4/E |
| GOTERM_MF_DIRECT | Cholesterol binding |
| GOTERM_BP_DIRECT | Cholesterol efflux |
| GOTERM_BP_DIRECT | Cholesterol homeostasis |
| GOTERM_BP_DIRECT | Cholesterol metabolic process |
| GOTERM_MF_DIRECT | Cholesterol transporter activity |
| GOTERM_CC_DIRECT | Chylomicron |
| UP_KEYWORDS | Chylomicron |
| GOTERM_BP_DIRECT | Chylomicron remnant clearance |
| UP_KEYWORDS | High-density lipoprotein |
| GOTERM_CC_DIRECT | High-density lipoprotein particle |
| GOTERM_BP_DIRECT | High-density lipoprotein particle assembly |
| GOTERM_BP_DIRECT | High-density lipoprotein particle clearance |
| GOTERM_MF_DIRECT | High-density lipoprotein particle receptor binding |
| GOTERM_BP_DIRECT | High-density lipoprotein particle remodeling |
| GOTERM_CC_DIRECT | Intermediate-density lipoprotein particle |
| GOTERM_MF_DIRECT | Lipase inhibitor activity |
| UP_KEYWORDS | Lipid transport |
| GOTERM_BP_DIRECT | Lipid transport |
| GOTERM_MF_DIRECT | Lipid transporter activity |
| GOTERM_BP_DIRECT | Lipoprotein biosynthetic process |
| GOTERM_BP_DIRECT | Lipoprotein metabolic process |
| GOTERM_CC_DIRECT | Low-density lipoprotein particle |
| GOTERM_BP_DIRECT | Low-density lipoprotein particle remodeling |
| GOTERM_BP_DIRECT | Negative regulation of cholesterol transport |
| GOTERM_BP_DIRECT | Negative regulation of lipid catabolic process |
| GOTERM_BP_DIRECT | Negative regulation of lipid metabolic process |
| GOTERM_BP_DIRECT | Negative regulation of receptor-mediated endocytosis |
| GOTERM_BP_DIRECT | Negative regulation of VLDL particle clearance |
| GOTERM_BP_DIRECT | Negative regulation of VLDL particle remodeling |
| GOTERM_MF_DIRECT | Phosphatidylcholine binding |
| GOTERM_MF_DIRECT | Phosphatidylcholine-sterol O-acyltransferase activator activity |
| GOTERM_BP_DIRECT | Phospholipid efflux |
| GOTERM_BP_DIRECT | Positive regulation of cholesterol esterification |
| GOTERM_BP_DIRECT | Positive regulation of fatty acid biosynthetic process |
| GOTERM_BP_DIRECT | Positive regulation of lipoprotein lipase activity |
| GOTERM_BP_DIRECT | Positive regulation of triglyceride catabolic process |
| GOTERM_BP_DIRECT | Regulation of Cdc42 protein signal transduction |
| GOTERM_BP_DIRECT | Regulation of intestinal cholesterol absorption |
| GOTERM_BP_DIRECT | Reverse cholesterol transport |
| GOTERM_CC_DIRECT | Spherical high-density lipoprotein particle |
| GOTERM_BP_DIRECT | Triglyceride catabolic process |
| GOTERM_BP_DIRECT | Triglyceride homeostasis |
| GOTERM_CC_DIRECT | VLDL particle |
| GOTERM_BP_DIRECT | VLDL particle remodeling |
| UP_KEYWORDS | VLDL |
| TAG and PL synthesis/metabolism | |
| GOTERM_MF_DIRECT | 1-Acylglycerol-3-phosphate O-acyltransferase activity |
| GOTERM_MF_DIRECT | 1-Acylglycerol-3-phosphate O-acyltransferase activity |
| GOTERM_BP_DIRECT | Acylglycerol catabolic process |
| GOTERM_BP_DIRECT | CDP-diacylglycerol biosynthetic process |
| GOTERM_BP_DIRECT | CDP-diacylglycerol biosynthetic process |
| GOTERM_BP_DIRECT | Glycerophospholipid biosynthetic process |
| Glycerophospholipid biosynthetic process | |
| GOTERM_BP_DIRECT | Glycerophospholipid catabolic process |
| KEGG_PATHWAY | Glycerophospholipid metabolism |
| GOTERM_BP_DIRECT | Phosphatidic acid biosynthetic process |
| UP_KEYWORDS | Phospholipid biosynthesis |
| GOTERM_BP_DIRECT | Phospholipid biosynthetic process |
| UP_KEYWORDS | Phospholipid metabolism |
| INTERPRO | Phospholipid/glycerol acyltransferase |
| GOTERM_BP_DIRECT | Triglyceride biosynthetic process |
| GOTERM_BP_DIRECT | Triglyceride lipase activity |
ACBP, acyl-CoA-binding protein; AMP, adenosine monophosphate; CDP, cytidine diphosphate; COT/CPT, carnitine octanoyltransferase/carnitine palmitoyltransferase.
Lipid Metabolism Proteins Present at Relatively Different Levels in Duodenal Biopsy Specimens in Response to Glucose or Water Consumption After an Overnight Fast After the Consumption of a High-Fat Liquid Meal
| Uniprot accession | Protein name | Gene name | Fold change | Lipid metabolism-related function | |
|---|---|---|---|---|---|
| P33897 | ATP binding cassette subfamily D member 1 | ABCD1 | -5.296 | .00108 | FA modification/ metabolism/transport |
| Q9BXW7 | Haloacid dehalogenase-like hydrolase domain-containing 5 | HDHD5 | -0.5832 | .0196 | TAG and PL synthesis/metabolism |
| Q00169 | Phosphatidylinositol transfer protein α isoform | PITPNA | -0.2974 | .0315 | Lipoprotein metabolism |
| P00325 | Alcohol dehydrogenase 1B | ADH1B | 0.427 | .0394 | FA modification/ metabolism/transport |
| P11766 | Alcohol dehydrogenase class-3 | ADH5 | 0.5992 | .0360 | FA modification/ metabolism/transport |
| Q8IV08 | Phospholipase D3 | PLD3 | 5.5249 | 1.31E-08 | TAG and PL synthesis/ metabolism |
NOTE. Duodenal biopsy samples were collected 10 hours after lipid and 1 hour after glucose or water ingestion from patients undergoing a diagnostic endoscopy (n = 5 patients per group). Lipid metabolism-related proteins were identified based on GO terms, and relative levels of proteins identified in at least 3 duodenal biopsy samples per group, or identified in at least 3 samples in 1 group and 0 samples in the other group, were compared. Numbers in the “Fold change” column represent how much higher (or lower if negative) the protein levels were in the glucose group compared with the water group. Proteins present at significantly different levels within the 2 treatment groups (P < .05, t test) are shown.
ATP, adenosine triphosphate; PL, phospholipid, TAG, triacylglycerol.
Only identified in response to water.
Only identified in response to glucose.