| Literature DB >> 30704029 |
Qiqi Wang1, Jiadan Xue2, Zhi Hong3, Yong Du4.
Abstract
Vibrational modes of pyrazinamide (Entities:
Keywords: 3-hydroxybenzoic acid; Raman spectroscopy; density functional theory; pyrazinamide; terahertz time-domain spectroscopy
Mesh:
Substances:
Year: 2019 PMID: 30704029 PMCID: PMC6384624 DOI: 10.3390/molecules24030488
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Molecular structure of pyrazinamide (PZA) (black arrows represent hydrogen bond donor positions and purple arrows indicate the possible positions of the hydrogen bond acceptor).
Figure 2THz spectra of PZA (a); 3-hydroxybenzoic acid (3-hBA) (b); physical mixture (c); solvent cocrystal (d); and grinding cocrystal (e).
Figure 3Comparison of THz spectra between simulated (a) and experimental (b) results of PZA and 3-hBA.
Figure 4Vibrational modes description of cocrystal between PZA and 3-hBA at 0.40 (a); 0.76 (b); 1.47 (c); and 1.66 (d) THz.
Vibrational modes assignment of cocrystal between PZA and 3-hBA.
| Mode | Experimental Result/THz | Theoretical Calculation/THz | Vibrational Mode Assignment |
|---|---|---|---|
| a | — | 0.40 | PZA and 3-hBA molecular out of plane bending vibration |
| b | 0.76 | 0.81 | R1, R2, H12–N11–H13 out of plane bending vibration |
| c | 1.47 | 1.47 | PZA and 3-hBA molecular in plane bending vibration |
| d | 1.66 | 1.61 | PZA and 3-hBA molecular out of plane bending vibration |
Figure 5Raman spectra of PZA (a); 3-hBA (b); physical mixture (c); their solvent cocrystal (d); and grinding cocrystal (e).
Figure 6Comparison of Raman spectra between simulated (a) and experimental (b) results of the cocrystal between PZA and 3-hBA.
Vibrational modes assignment for Raman characteristic peaks of the cocrystal between PZA and 3-hBA.
| Mode | Theoretical Wavenumber/cm−1 | Experimental Wavenumber/cm−1 | Mode Assignment |
|---|---|---|---|
| ν1 | 237 | 246 | ω (C18–H19, C14–H25, C16–H21, O22–H23) |
| ν2 | 260 | 265 | Def (R2), ρ (H12–N11–H13, C9=O10) |
| ν3 | 344 | - | ρ (O22–H23) |
| ν4 | 374 | 386 | ρ (H29–O28–C27=O30, H12–N11–H13, C15–O22–H23) |
| ν5 | 405 | 405 | ρ (C16–H21, C15–O22–H23, H12–N11–H13) |
| ν6 | 427 | 431/450 | ω (C17–H20, C14–H25, C16–H21) |
| ν7 | 511 | 513 | ρ (H12–N11–H13, C9=O10, C16–H21, C15–O22–H23) |
| ν8 | 526 | 526 | Def (R1), ρ (12H–N11–H13, C15–O22–H23, C9=O18) |
| ν9 | 560 | 552 | ω (H12–N11–H13) |
| ν10 | 625 | 625 | Def (R2), ρ (H12–N11–H13, C9=O10) |
| ν11 | 666 | 663 | Def (R1, R2), ρ (H12–N11–H13, O30=C27–O28–H29) |
| ν12 | 770 | 762 | Def R1, δ (O30=C27–O28–H29) |
| ν13 | 819 | 813 | ω (N12–H11–H13) |
| ν14 | 890 | 864/908 | ω (C14–H25, C16–H21, C4–H7, C5–H8) |
| ν15 | 940 | 934 | ω (O28–H29) |
| ν16 | 998 | 998 | Def (R1) |
| ν17 | 1024 | 1026 | Def (R2) |
| ν18 | 1054 | 1055 | Def (R2) |
| ν19 | 1079 | 1071 | ρ (C18–H19, C16–H21, C14–H25, C17–H20, C22–H23) |
| ν20 | 1119 | 1096 | δ (H12–N11–H13) |
| ν21 | 1179 | 1166/1185 | δ (H21–C16=C17–H20), ρ (C18–H19, O22–H23, C14–H25) |
| ν22 | 1293 | 1300 | ρ (O28–H29, C4–H7, C10–H19, C14–H29, C17–H20)) |
| ν23 | 1324 | 1316 | ρ (C14–H25, C17–H20, C18–H19, C16–H21, O22–H23, O28–H29) |
| ν24 | 1388 | 1386 | ρ (N11–H13, C4–H7, C5–H8, C2–H24) |
| ν25 | 1433 | 1433 | δ (H13–N11–C9, H29–O28–C27=O30), τ (-NH2), ρ (C5–H8) |
| ν26 | 1453 | 1450 | δ (H13–N11–C9), ρ (O28–H29, C16–H21, C18–H19, C5–H8) |
| ν27 | 1468 | 1478 | δ (H30=C27–O28–H29), ρ (H13–N11, C16–H21, C4–H7, C5–H8, C17–H20) θ (C26–C27) |
| ν28 | 1555 | 1530 | Def(R2) |
| ν29 | 1575 | 1580 | δ (H12–N11–H13) |
| ν30 | 1590 | 1593 | Def (R2) |
| ν31 | 1623 | 1610 | Def (R1) |
| ν32 | 1693 | 1693 | θ (C27=O30, C9=H10), δ (H12–N11–H13, C27–O28–H29) |
θ-stretching vibration, ρ-in plane bending vibration, ω-out of plane bending vibration, δ-scissoring vibration, Def-deformation, R1-the six ring in 3-hBA, R2-the six ring in PZA.
Figure 7Typical bond lengths of the cocrystal between PZA and 3-hBA (bond length shown with unit Å).
Change of characteristic bond lengths between PZA, 3-hBA, and their cocrystal.
| Chemical Bond | Bond Length/Å | ||
|---|---|---|---|
| PZA | 3-hBA | Cocrystal | |
| C27=O30 | - | 1.225 | 1.258 |
| C27–O30 | - | 1.431 | 1.323 |
| O28–H29 | 0.963 | 1.000 | |
| N11–H13 | 0.998 | 1.022 | |
| N11–C9 | 1.467 | 1.334 | |
| C9=O10 | 1.238 | 1.259 | |