Literature DB >> 30701708

Continued misuse of multiple testing correction methods in population genetics-A wake-up call?

Arun Sethuraman1, Nicolette M Gonzalez1, Christy E Grenier1, Khyati S Kansagra1, Ken K Mey1, Stefany B Nunez-Zavala1, Bryce E W Summerhays1, Gwendalyn K Wulf1.   

Abstract

Population geneticists often use multiple independent hypothesis tests of Hardy-Weinberg Equilibrium (HWE), Linkage Disequilibrium (LD), and population differentiation, to make broad inferences about their systems of choice. However, correcting for Family-Wise Error Rates (FWER) that are inflated due to multiple comparisons, is sparingly reported in our current literature. In this issue of Molecular Ecology Resources, perform a meta-analysis of 215 population genetics studies published between 2011 and 2013 to show (i) scarce use of FWER corrections across all three classes of tests, and (ii) when used, inconsistent application of correction methods with a clear bias towards less-conservative corrections for tests of population differentiation, than for tests of HWE, and LD. Here we replicate this meta-analysis using 205 population genetics studies published between 2013 and 2018, to show the same continued disuse, and inconsistencies. We hope that both studies serve as a wake-up call to population geneticists, reviewers, and editors to be rigorous about consistently correcting for FWER inflation.
© 2019 John Wiley & Sons Ltd.

Keywords:  Bonferroni; FWER; multiple comparisons; population genetics-empirical; type I error

Mesh:

Year:  2019        PMID: 30701708     DOI: 10.1111/1755-0998.12969

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


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2.  Commonly used Hardy-Weinberg equilibrium filtering schemes impact population structure inferences using RADseq data.

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  2 in total

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