Literature DB >> 30698466

Identification of a 26-lncRNAs Risk Model for Predicting Overall Survival of Cervical Squamous Cell Carcinoma Based on Integrated Bioinformatics Analysis.

Yu Mao1, Zhanzhao Fu1, Lixin Dong1, Yue Zheng1, Jing Dong1, Xin Li1.   

Abstract

As a common malignancy in women, cervical squamous cell carcinoma is a major cause of cancer-related mortality globally. Recent studies have demonstrated that long non-coding RNA (lncRNA) can function as potential biomarkers in cancer prognosis; however, little is known about its role in cervical cancer. In this study, we downloaded the gene expression profiles along with the clinical data of patients with cervical squamous cell carcinoma from The Cancer Genome Atlas. By applying bioinformatics analysis including random forest selection and Least Absolute Shrinkage and Selection Operator (LASSO) cox regression model along with 10-fold cross-validation, we constructed a 26-lncRNAs risk model that can be used to predict the overall survival of cervical squamous cell carcinoma. After that, Kaplan-Meier analysis combined with log-rank p test was applied to assess the predictive accuracy of the 26-lncRNAs risk model. Further analysis showed that the prognostic value of 26-lncRNAs risk model was independent of other clinicopathological factors. At last, lncRNAs in the model were put into gene ontology biological process enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathways analysis, which suggested that these lncRNAs might contribute to cancer-associated processes such as cell cycle and apoptosis. This study indicated that lncRNAs signature could be a useful marker to predict the prognosis of cervical squamous cell carcinoma.

Entities:  

Keywords:  TCGA; cervical squamous cell carcinoma; lncRNA; overall survival

Mesh:

Substances:

Year:  2019        PMID: 30698466     DOI: 10.1089/dna.2018.4533

Source DB:  PubMed          Journal:  DNA Cell Biol        ISSN: 1044-5498            Impact factor:   3.311


  7 in total

1.  Identification of a Six-Gene Signature for Predicting the Overall Survival of Cervical Cancer Patients.

Authors:  Xiao Huo; Xiaoshuang Zhou; Peng Peng; Mei Yu; Ying Zhang; Jiaxin Yang; Dongyan Cao; Hengzi Sun; Keng Shen
Journal:  Onco Targets Ther       Date:  2021-02-05       Impact factor: 4.147

2.  Prediction of Recurrence in Cervical Cancer Using a Nine-lncRNA Signature.

Authors:  Yu Mao; Lixin Dong; Yue Zheng; Jing Dong; Xin Li
Journal:  Front Genet       Date:  2019-04-03       Impact factor: 4.599

3.  Hypoxic exosomes facilitate angiogenesis and metastasis in esophageal squamous cell carcinoma through altering the phenotype and transcriptome of endothelial cells.

Authors:  Yu Mao; Yimin Wang; Lixin Dong; Yunjie Zhang; Yanqiu Zhang; Chao Wang; Qiang Zhang; Sen Yang; Liyan Cao; Xinyuan Zhang; Xin Li; Zhanzhao Fu
Journal:  J Exp Clin Cancer Res       Date:  2019-09-05

4.  Identification of Candidate Biomarkers and Analysis of Prognostic Values in Oral Squamous Cell Carcinoma.

Authors:  Guang-Zhao Huang; Qing-Qing Wu; Ze-Nan Zheng; Ting-Ru Shao; Xiao-Zhi Lv
Journal:  Front Oncol       Date:  2019-10-18       Impact factor: 6.244

5.  Identification of significant genes signatures and prognostic biomarkers in cervical squamous carcinoma via bioinformatic data.

Authors:  Yunan He; Shunjie Hu; Jiaojiao Zhong; Anran Cheng; Nianchun Shan
Journal:  PeerJ       Date:  2020-12-02       Impact factor: 2.984

6.  A novel prognostic prediction model based on seven immune-related RNAs for predicting overall survival of patients in early cervical squamous cell carcinoma.

Authors:  Rui Qin; Lu Cao; Cong Ye; Junrong Wang; Ziqian Sun
Journal:  BMC Med Genomics       Date:  2021-02-15       Impact factor: 3.063

7.  The Prognostic Signature and Potential Target Genes of Six Long Non-coding RNA in Laryngeal Squamous Cell Carcinoma.

Authors:  Shiqi Gong; Meng Xu; Yiyun Zhang; Yamin Shan; Hao Zhang
Journal:  Front Genet       Date:  2020-04-28       Impact factor: 4.599

  7 in total

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