Literature DB >> 30692694

Precise RNA editing by recruiting endogenous ADARs with antisense oligonucleotides.

Tobias Merkle1, Sarah Merz1, Philipp Reautschnig1, Andreas Blaha1, Qin Li2, Paul Vogel1, Jacqueline Wettengel1, Jin Billy Li2, Thorsten Stafforst3.   

Abstract

Site-directed RNA editing might provide a safer or more effective alternative to genome editing in certain clinical scenarios. Until now, RNA editing has relied on overexpression of exogenous RNA editing enzymes or of endogenous human ADAR (adenosine deaminase acting on RNA) enzymes. Here we describe the engineering of chemically optimized antisense oligonucleotides that recruit endogenous human ADARs to edit endogenous transcripts in a simple and programmable way, an approach we call RESTORE (recruiting endogenous ADAR to specific transcripts for oligonucleotide-mediated RNA editing). We observed almost no off-target editing, and natural editing homeostasis was not perturbed. We successfully applied RESTORE to a panel of standard human cell lines and human primary cells and demonstrated repair of the clinically relevant PiZZ mutation, which causes α1-antitrypsin deficiency, and editing of phosphotyrosine 701 in STAT1, the activity switch of the signaling factor. RESTORE requires only the administration of an oligonucleotide, circumvents ectopic expression of proteins, and represents an attractive approach for drug development.

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Year:  2019        PMID: 30692694     DOI: 10.1038/s41587-019-0013-6

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  62 in total

1.  A cytosine deaminase for programmable single-base RNA editing.

Authors:  Omar O Abudayyeh; Jonathan S Gootenberg; Brian Franklin; Jeremy Koob; Max J Kellner; Alim Ladha; Julia Joung; Paul Kirchgatterer; David B T Cox; Feng Zhang
Journal:  Science       Date:  2019-07-11       Impact factor: 47.728

2.  Explaining Pathogenicity of Congenital Zika and Guillain-Barré Syndromes: Does Dysregulation of RNA Editing Play a Role?

Authors:  Helen Piontkivska; Noel-Marie Plonski; Michael M Miyamoto; Marta L Wayne
Journal:  Bioessays       Date:  2019-05-20       Impact factor: 4.345

3.  REPAIRx, a specific yet highly efficient programmable A > I RNA base editor.

Authors:  Yajing Liu; Shaoshuai Mao; Shisheng Huang; Yongqin Li; Yuxin Chen; Minghui Di; Xinxin Huang; Junjun Lv; Xinxin Wang; Jianyang Ge; Shengxi Shen; Xiaoming Zhang; Dahai Liu; Xingxu Huang; Tian Chi
Journal:  EMBO J       Date:  2020-10-15       Impact factor: 11.598

Review 4.  Applications of genome editing technology in the targeted therapy of human diseases: mechanisms, advances and prospects.

Authors:  Hongyi Li; Yang Yang; Weiqi Hong; Mengyuan Huang; Min Wu; Xia Zhao
Journal:  Signal Transduct Target Ther       Date:  2020-01-03

Review 5.  Off-Target Editing by CRISPR-Guided DNA Base Editors.

Authors:  SeHee Park; Peter A Beal
Journal:  Biochemistry       Date:  2019-08-26       Impact factor: 3.162

6.  irCLASH reveals RNA substrates recognized by human ADARs.

Authors:  Yulong Song; Wenbing Yang; Qiang Fu; Liang Wu; Xueni Zhao; Yusen Zhang; Rui Zhang
Journal:  Nat Struct Mol Biol       Date:  2020-03-23       Impact factor: 15.369

7.  Programmable RNA editing by recruiting endogenous ADAR using engineered RNAs.

Authors:  Liang Qu; Zongyi Yi; Shiyou Zhu; Chunhui Wang; Zhongzheng Cao; Zhuo Zhou; Pengfei Yuan; Ying Yu; Feng Tian; Zhiheng Liu; Ying Bao; Yanxia Zhao; Wensheng Wei
Journal:  Nat Biotechnol       Date:  2019-07-15       Impact factor: 54.908

Review 8.  RNA-targeting CRISPR systems from metagenomic discovery to transcriptomic engineering.

Authors:  Aaron A Smargon; Yilan J Shi; Gene W Yeo
Journal:  Nat Cell Biol       Date:  2020-02-03       Impact factor: 28.824

9.  Rational Design of RNA Editing Guide Strands: Cytidine Analogs at the Orphan Position.

Authors:  Erin E Doherty; Xander E Wilcox; Lenka van Sint Fiet; Cherie Kemmel; Janne J Turunen; Bart Klein; Dean J Tantillo; Andrew J Fisher; Peter A Beal
Journal:  J Am Chem Soc       Date:  2021-05-03       Impact factor: 15.419

10.  Regulation of RNA editing by intracellular acidification.

Authors:  Turnee N Malik; Erin E Doherty; Vandana M Gaded; Theodore M Hill; Peter A Beal; Ronald B Emeson
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

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