Literature DB >> 30689953

2-Aminothiazole Derivatives as Selective Allosteric Modulators of the Protein Kinase CK2. 1. Identification of an Allosteric Binding Site.

Benoît Bestgen1,2,3,4,5, Isabelle Krimm6, Irina Kufareva7, Ahmed Ashraf Moustafa Kamal8, Wei-Guang Seetoh9, Chris Abell9, Rolf W Hartmann8, Ruben Abagyan7, Claude Cochet3,4,5, Marc Le Borgne2, Matthias Engel1, Thierry Lomberget2.   

Abstract

CK2 is a ubiquitous Ser/Thr protein kinase involved in the control of various signaling pathways and is known to be constitutively active. In the present study, we identified aryl 2-aminothiazoles as a novel class of CK2 inhibitors, which displayed a non-ATP-competitive mode of action and stabilized an inactive conformation of CK2 in solution. Enzyme kinetics studies, STD NMR, circular dichroism spectroscopy, and native mass spectrometry experiments demonstrated that the compounds bind in an allosteric pocket outside the ATP-binding site. Our data, combined with molecular docking studies, strongly suggested that this new binding site was located at the interface between the αC helix and the flexible glycine-rich loop. A first hit optimization led to compound 7, exhibiting an IC50 of 3.4 μM against purified CK2α in combination with a favorable selectivity profile. Thus, we identified a novel class of CK2 inhibitors targeting an allosteric pocket, offering great potential for further optimization into anticancer drugs.

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Year:  2019        PMID: 30689953      PMCID: PMC7667462          DOI: 10.1021/acs.jmedchem.8b01766

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  34 in total

Review 1.  Protein kinase CK2: structure, regulation and role in cellular decisions of life and death.

Authors:  David W Litchfield
Journal:  Biochem J       Date:  2003-01-01       Impact factor: 3.857

2.  CX-4945, an orally bioavailable selective inhibitor of protein kinase CK2, inhibits prosurvival and angiogenic signaling and exhibits antitumor efficacy.

Authors:  Adam Siddiqui-Jain; Denis Drygin; Nicole Streiner; Peter Chua; Fabrice Pierre; Sean E O'Brien; Josh Bliesath; Mayuko Omori; Nanni Huser; Caroline Ho; Chris Proffitt; Michael K Schwaebe; David M Ryckman; William G Rice; Kenna Anderes
Journal:  Cancer Res       Date:  2010-12-15       Impact factor: 12.701

3.  Inclining the purine base binding plane in protein kinase CK2 by exchanging the flanking side-chains generates a preference for ATP as a cosubstrate.

Authors:  Christina W Yde; Inessa Ermakova; Olaf-Georg Issinger; Karsten Niefind
Journal:  J Mol Biol       Date:  2005-01-18       Impact factor: 5.469

Review 4.  New protein kinase CK2 inhibitors: jumping out of the catalytic box.

Authors:  Renaud Prudent; Claude Cochet
Journal:  Chem Biol       Date:  2009-02-27

5.  Design, validation and efficacy of bisubstrate inhibitors specifically affecting ecto-CK2 kinase activity.

Authors:  Giorgio Cozza; Sofia Zanin; Stefania Sarno; Elena Costa; Cristina Girardi; Giovanni Ribaudo; Mauro Salvi; Giuseppe Zagotto; Maria Ruzzene; Lorenzo A Pinna
Journal:  Biochem J       Date:  2015-09-08       Impact factor: 3.857

6.  Antitumoral activity of allosteric inhibitors of protein kinase CK2.

Authors:  Virginie Moucadel; Renaud Prudent; Céline F Sautel; Florence Teillet; Caroline Barette; Laurence Lafanechere; Veronique Receveur-Brechot; Claude Cochet
Journal:  Oncotarget       Date:  2011-12

7.  Pocketome: an encyclopedia of small-molecule binding sites in 4D.

Authors:  Irina Kufareva; Andrey V Ilatovskiy; Ruben Abagyan
Journal:  Nucleic Acids Res       Date:  2011-11-12       Impact factor: 16.971

8.  Specific inhibition of CK2α from an anchor outside the active site.

Authors:  Paul Brear; Claudia De Fusco; Kathy Hadje Georgiou; Nicola J Francis-Newton; Christopher J Stubbs; Hannah F Sore; Ashok R Venkitaraman; Chris Abell; David R Spring; Marko Hyvönen
Journal:  Chem Sci       Date:  2016-07-12       Impact factor: 9.825

9.  Second-generation CK2α inhibitors targeting the αD pocket.

Authors:  Jessica Iegre; Paul Brear; Claudia De Fusco; Masao Yoshida; Sophie L Mitchell; Maxim Rossmann; Laura Carro; Hannah F Sore; Marko Hyvönen; David R Spring
Journal:  Chem Sci       Date:  2018-02-20       Impact factor: 9.825

10.  Identification of a novel function of CX-4945 as a splicing regulator.

Authors:  Hyeongki Kim; Kwangman Choi; Hyunju Kang; So-Young Lee; Seung-Wook Chi; Min-Sung Lee; Jaehyoung Song; Donghwa Im; Yura Choi; Sungchan Cho
Journal:  PLoS One       Date:  2014-04-17       Impact factor: 3.240

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  7 in total

1.  2-Aminothiazole Derivatives as Selective Allosteric Modulators of the Protein Kinase CK2. 2. Structure-Based Optimization and Investigation of Effects Specific to the Allosteric Mode of Action.

Authors:  Benoît Bestgen; Irina Kufareva; Weiguang Seetoh; Chris Abell; Rolf W Hartmann; Ruben Abagyan; Marc Le Borgne; Odile Filhol; Claude Cochet; Thierry Lomberget; Matthias Engel
Journal:  J Med Chem       Date:  2019-02-13       Impact factor: 7.446

2.  Proposed Allosteric Inhibitors Bind to the ATP Site of CK2α.

Authors:  Paul Brear; Darby Ball; Katherine Stott; Sheena D'Arcy; Marko Hyvönen
Journal:  J Med Chem       Date:  2020-10-29       Impact factor: 7.446

3.  Identification and Biological Evaluation of CK2 Allosteric Fragments through Structure-Based Virtual Screening.

Authors:  Chunqiong Li; Xuewen Zhang; Na Zhang; Yue Zhou; Guohui Sun; Lijiao Zhao; Rugang Zhong
Journal:  Molecules       Date:  2020-01-06       Impact factor: 4.411

Review 4.  Development and therapeutic potential of 2-aminothiazole derivatives in anticancer drug discovery.

Authors:  Seyedeh Roya Alizadeh; Seyedeh Mahdieh Hashemi
Journal:  Med Chem Res       Date:  2021-01-15       Impact factor: 1.965

Review 5.  Targeting Protein Kinases in Blood Cancer: Focusing on CK1α and CK2.

Authors:  Zaira Spinello; Anna Fregnani; Laura Quotti Tubi; Livio Trentin; Francesco Piazza; Sabrina Manni
Journal:  Int J Mol Sci       Date:  2021-04-02       Impact factor: 5.923

6.  Computational Analysis of Crystallization Additives for the Identification of New Allosteric Sites.

Authors:  Jade Fogha; Julien Diharce; Alan Obled; Samia Aci-Sèche; Pascal Bonnet
Journal:  ACS Omega       Date:  2020-02-03

Review 7.  Downfalls of Chemical Probes Acting at the Kinase ATP-Site: CK2 as a Case Study.

Authors:  Eleanor L Atkinson; Jessica Iegre; Paul D Brear; Elizabeth A Zhabina; Marko Hyvönen; David R Spring
Journal:  Molecules       Date:  2021-03-31       Impact factor: 4.411

  7 in total

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