Literature DB >> 30689638

Correction: Electro-Acoustic Behavior of the Mitotic Spindle: A Semi-Classical Coarse-Grained Model.

Daniel Havelka, Ondřej Kučera, Marco A Deriu, Michal Cifra.   

Abstract

[This corrects the article DOI: 10.1371/journal.pone.0086501.].

Entities:  

Year:  2019        PMID: 30689638      PMCID: PMC6349308          DOI: 10.1371/journal.pone.0210897

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


There are errors in the values reported for parameters a, b, c, and V in Table 1. Please see the correct Table 1 here.
Table 1

List of parameters.

SymbolDescriptionValueUnits
Dαdipole moment of α monomer369D
Dβdipole moment of β monomer26D
saxial shift between protofilaments0.92nm
ζdiameter of MT rings10.76nm
Ξleading angle of MT rings10.28degrees
amajor axis of ellipsoid cell10.32μm
bminor axis of ellipsoid cell5.28μm
Rradius of non-dividing spherical cell3.3μm
Vvolume of spherical cell with radius R150.5μm3
cposition of MTOC on the x-axis3.089μm
ρdiameter of MTOC200nm
Nnumber of MTs300-
Nanumber of nucleation centers, astral MTs, one MTOC50-
Nknumber of nucleation centers, kinetochore MTs, one MTOC50-
Npnumber of nucleation centers, polar MTs, one MTOC50-

κa

equivalent number of nucleation centers

120

-

Ωaspatial angle for division of MTOC, astral MTs2.8212sr
κp+kequivalent number of nucleation centers225-
Ωp+kspatial angle for division of MTOC, polar and kinetochore MTs2.9154sr
mqarbitrary constant1-
uindex of polar and kinetochore MTs1, 2, …, 200
πmathematical constant3.14159-
nindex denoting nth MT1,2,…,N-
pOscillating part of dipole moment of α-tubulin(3.8)−1-
poscillating part of dipole moment of β-tubulin(3.8)−1-
Qquality factor0.5 ÷ 100-
k1coefficient of extrapolation2.5304 ⋅ 1012-
rradius of outer wall of MT12.5nm
k2coefficient of extrapolation9.0966 ⋅ 108-
lTHlength of tubulin heterodimer8nm

The list of symbols (in the order of appearance) representing variables of the model and their values used for calculations.

κ equivalent number of nucleation centers 120 - The list of symbols (in the order of appearance) representing variables of the model and their values used for calculations. There is an error in the equation in the third sentence in the “The arrangement of microtubules” subsection of the Models section. The equation describing the distance from the origin of the coordinate system for MTOC placement on the x-axis is incorrect. Please see the correct equation here: There is an error in the Eq (6) in the “Calculation of the intensity of the electric field” subsection of the Models section. Please see the correct Eq (6) here: There is an error in the Eq (7) in the “Calculation of the intensity of the electric field” subsection of the Models section. Please see the correct Eq (7) here: The authors confirm that the code used in the modelling do not contain the errors in parameters and equations, which affect only the description of the models. The results and conclusions are therefore unaffected by these corrections to the reporting of the methodology. There are errors in the scale of the y-axis shown for the bottom panel of Fig 10. Please see the correct Fig 10 here.
Fig 10

Electrical parameters of the cytosol.

We used homogeneous electrical properties of the surroundings of the MTs in our model. The figure shows frequency versus complex permittivity plot. The real part of the complex permittivity (up) represents the value of the relative electrical permittivity, and therefore energy stored in the material, and the imaginary part (down) corresponds to dielectric losses.

Electrical parameters of the cytosol.

We used homogeneous electrical properties of the surroundings of the MTs in our model. The figure shows frequency versus complex permittivity plot. The real part of the complex permittivity (up) represents the value of the relative electrical permittivity, and therefore energy stored in the material, and the imaginary part (down) corresponds to dielectric losses.
  1 in total

1.  Electro-acoustic behavior of the mitotic spindle: a semi-classical coarse-grained model.

Authors:  Daniel Havelka; Ondřej Kučera; Marco A Deriu; Michal Cifra
Journal:  PLoS One       Date:  2014-01-30       Impact factor: 3.240

  1 in total

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