Literature DB >> 30689055

Stability of cytochromes c' from psychrophilic and piezophilic Shewanella species: implications for complex multiple adaptation to low temperature and high hydrostatic pressure.

Asako Suka1, Hiroya Oki2, Yuki Kato1, Kazuki Kawahara2, Tadayasu Ohkubo2, Takahiro Maruno3, Yuji Kobayashi3, Sotaro Fujii1, Satoshi Wakai4, Lisa Lisdiana1,5, Yoshihiro Sambongi6.   

Abstract

The stability of dimeric cytochrome c' from a thermophile, as compared with that of a homologous mesophilic counterpart, is attributed to strengthened interactions around the heme and at the subunit-subunit interface, both of which are molecular interior regions. Here, we showed that interactions in the equivalent interior regions of homologous cytochromes c' from two psychrophiles, Shewanella benthica and Shewanella violacea (SBCP and SVCP, respectively) were similarly weakened as compared with those of the counterparts of psychrophilic Shewanella livingstonensis and mesophilic Shewanella amazonensis (SLCP and SACP, respectively), and consistently the stability of SVCP, SLCP, and SACP increased in that order. Therefore, the stability of cytochromes c' from the psychrophile, mesophile, and thermophile is systematically regulated in their molecular interior regions. Unexpectedly, however, the stability of SBCP was significantly higher than that of SVCP, and the former had additional molecular surface interactions. Collectively, SBCP had weakened interior interactions like SVCP did, but the former was stabilized at the molecular surface as compared with the latter, implying complex multiple adaptation of the proteins because the psychrophilic sources of SBCP and SVCP are also piezophilic, thriving in deep-sea extreme environments of low temperature and high hydrostatic pressure.

Entities:  

Keywords:  Cytochrome c′; Piezophile; Protein stability; Psychrophile; Shewanella

Mesh:

Substances:

Year:  2019        PMID: 30689055     DOI: 10.1007/s00792-019-01077-9

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  37 in total

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Review 3.  Cytochrome c from a thermophilic bacterium has provided insights into the mechanisms of protein maturation, folding, and stability.

Authors:  Yoshihiro Sambongi; Susumu Uchiyama; Yuji Kobayashi; Yasuo Igarashi; Jun Hasegawa
Journal:  Eur J Biochem       Date:  2002-07

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Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

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Authors:  Susumu Uchiyama; Atsushi Ohshima; Shota Nakamura; Jun Hasegawa; Norifumi Terui; Shin-ichi Joseph Takayama; Yasuhiko Yamamoto; Yoshihiro Sambongi; Yuji Kobayashi
Journal:  J Am Chem Soc       Date:  2004-11-17       Impact factor: 15.419

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Journal:  Biochim Biophys Acta       Date:  1991-05-23

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Journal:  Biochem J       Date:  1991-05-15       Impact factor: 3.857

8.  Effects of charge-to-alanine substitutions on the stability of ribosomal protein L30e from Thermococcus celer.

Authors:  Chi-Fung Lee; George I Makhatadze; Kam-Bo Wong
Journal:  Biochemistry       Date:  2005-12-27       Impact factor: 3.162

9.  Molecular determinants of xylose isomerase thermal stability and activity: analysis of thermozymes by site-directed mutagenesis.

Authors:  D Sriprapundh; C Vieille; J G Zeikus
Journal:  Protein Eng       Date:  2000-04

10.  Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

Authors:  P Schuck
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

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  2 in total

1.  Crystal structure of thermally stable homodimeric cytochrome c'-β from Thermus thermophilus.

Authors:  Taisuke Yoshimi; Sotaro Fujii; Hiroya Oki; Takeshi Igawa; Hannah R Adams; Kengo Ueda; Kazuki Kawahara; Tadayasu Ohkubo; Michael A Hough; Yoshihiro Sambongi
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-05-27       Impact factor: 1.072

2.  Convergent Evolution and Structural Adaptation to the Deep Ocean in the Protein-Folding Chaperonin CCTα.

Authors:  Alexandra A-T Weber; Andrew F Hugall; Timothy D O'Hara
Journal:  Genome Biol Evol       Date:  2020-11-03       Impact factor: 3.416

  2 in total

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