Literature DB >> 30688299

Exploring the Effects of Spaceflight on Mouse Physiology using the Open Access NASA GeneLab Platform.

Afshin Beheshti1, Yasaman Shirazi-Fard2, Sungshin Choi3, Daniel Berrios4, Samrawit G Gebre3, Jonathan M Galazka2, Sylvain V Costes5.   

Abstract

Performing biological experiments in space requires special accommodations and procedures to ensure that these investigations are performed effectively and efficiently. Moreover, given the infrequency of these experiments it is imperative that their impacts be maximized. The rapid advancement of omics technologies offers an opportunity to dramatically increase the volume of data produced from precious spaceflight specimens. To capitalize on this, NASA has developed the GeneLab platform to provide unrestricted access to spaceflight omics data and encourage its widespread analysis. Rodents (both rats and mice) are common model organisms used by scientists to investigate space-related biological impacts. The enclosure that house rodents during spaceflight are called Rodent Habitats (formerly Animal Enclosure Modules), and are substantially different from standard vivarium cages in their dimensions, air flow, and access to water and food. In addition, due to environmental and atmospheric conditions on the International Space Station (ISS), animals are exposed to a higher CO2 concentration. We recently reported that mice in the Rodent Habitats experience large changes in their transcriptome irrespective of whether animals were on the ground or in space. Furthermore, these changes were consistent with a hypoxic response, potentially driven by higher CO2 concentrations. Here we describe how a typical rodent experiment is performed in space, how omics data from these experiments can be accessed through the GeneLab platform, and how to identify key factors in this data. Using this process, any individual can make critical discoveries that could change the design of future space missions and activities.

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Year:  2019        PMID: 30688299     DOI: 10.3791/58447

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  4 in total

1.  Reproducible changes in the gut microbiome suggest a shift in microbial and host metabolism during spaceflight.

Authors:  Peng Jiang; Stefan J Green; George E Chlipala; Fred W Turek; Martha Hotz Vitaterna
Journal:  Microbiome       Date:  2019-08-09       Impact factor: 14.650

2.  The Importance of Earth Reference Controls in Spaceflight -Omics Research: Characterization of Nucleolin Mutants from the Seedling Growth Experiments.

Authors:  Aránzazu Manzano; Alicia Villacampa; Julio Sáez-Vásquez; John Z Kiss; F Javier Medina; Raúl Herranz
Journal:  iScience       Date:  2020-10-15

3.  Effects of spaceflight aboard the International Space Station on mouse estrous cycle and ovarian gene expression.

Authors:  Xiaoman Hong; Anamika Ratri; Sungshin Y Choi; Joseph S Tash; April E Ronca; Joshua S Alwood; Lane K Christenson
Journal:  NPJ Microgravity       Date:  2021-03-12       Impact factor: 4.415

4.  NASA GeneLab: interfaces for the exploration of space omics data.

Authors:  Daniel C Berrios; Jonathan Galazka; Kirill Grigorev; Samrawit Gebre; Sylvain V Costes
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

  4 in total

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