Literature DB >> 30686944

plotROC: A Tool for Plotting ROC Curves.

Michael C Sachs1.   

Abstract

Plots of the receiver operating characteristic (ROC) curve are ubiquitous in medical research. Designed to simultaneously display the operating characteristics at every possible value of a continuous diagnostic test, ROC curves are used in oncology to evaluate screening, diagnostic, prognostic and predictive biomarkers. I reviewed a sample of ROC curve plots from the major oncology journals in order to assess current trends in usage and design elements. My review suggests that ROC curve plots are often ineffective as statistical charts and that poor design obscures the relevant information the chart is intended to display. I describe my new R package that was created to address the shortcomings of existing tools. The package has functions to create informative ROC curve plots, with sensible defaults and a simple interface, for use in print or as an interactive web-based plot. A web application was developed to reach a broader audience of scientists who do not use R.

Entities:  

Keywords:  ROC curves; graphics; interactive; plots

Year:  2017        PMID: 30686944      PMCID: PMC6347406          DOI: 10.18637/jss.v079.c02

Source DB:  PubMed          Journal:  J Stat Softw        ISSN: 1548-7660            Impact factor:   6.440


  4 in total

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Journal:  Biometrics       Date:  2000-06       Impact factor: 2.571

2.  D³: Data-Driven Documents.

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Authors:  Tobias Sing; Oliver Sander; Niko Beerenwinkel; Thomas Lengauer
Journal:  Bioinformatics       Date:  2005-08-11       Impact factor: 6.937

4.  pROC: an open-source package for R and S+ to analyze and compare ROC curves.

Authors:  Xavier Robin; Natacha Turck; Alexandre Hainard; Natalia Tiberti; Frédérique Lisacek; Jean-Charles Sanchez; Markus Müller
Journal:  BMC Bioinformatics       Date:  2011-03-17       Impact factor: 3.307

  4 in total
  47 in total

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Journal:  Epigenetics       Date:  2020-10-13       Impact factor: 4.528

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9.  Predict Colon Cancer by Pairing Plasma miRNAs: Establishment of a Normalizer-Free, Cross-Platform Model.

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10.  Continuous diffusion spectrum computation for diffusion-weighted magnetic resonance imaging of the kidney tubule system.

Authors:  Joāo S Periquito; Thomas Gladytz; Jason M Millward; Paula Ramos Delgado; Kathleen Cantow; Dirk Grosenick; Luis Hummel; Ariane Anger; Kaixuan Zhao; Erdmann Seeliger; Andreas Pohlmann; Sonia Waiczies; Thoralf Niendorf
Journal:  Quant Imaging Med Surg       Date:  2021-07
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