Literature DB >> 30684656

Prediction of drug response and adverse drug reactions: From twin studies to Next Generation Sequencing.

Volker M Lauschke1, Magnus Ingelman-Sundberg2.   

Abstract

Understanding and predicting inter-individual differences related to the success of drug therapy is of tremendous importance, both during drug development and for clinical applications. Importantly, while seminal twin studies indicate that the majority of inter-individual differences in drug disposition are driven by hereditary factors, common genetic polymorphisms explain only less than half of this genetically encoded variability. Recent progress in Next Generation Sequencing (NGS) technologies has for the first time allowed to comprehensively map the genetic landscape of human pharmacogenes. Importantly, these projects have unveiled vast numbers of rare genetic variants, which are estimated to contribute substantially to the missing heritability of drug metabolism phenotypes. However, functional interpretation of these rare variants remains challenging and constitutes one of the important frontiers of contemporary pharmacogenomics. Furthermore, NGS technologies face challenges in the interrogation of genes residing in complex genomic regions, such as CYP2D6 and HLA genes. We here provide an update of the implementation of pharmacogenomic variations in the clinical setting and present emerging strategies that facilitate the translation of NGS data into clinically useful information. Importantly, we anticipate that these developments will soon result in a paradigm shift of pre-emptive genotyping away from the interrogation to candidate variants and towards the comprehensive profiling of an individuals genotype, thus allowing for a true individualization of patient drug treatment regimens.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cytochrome P450; Drug development; Long read sequencing; Pharmacogenomics; Precision medicine; Rare genetic variants

Mesh:

Substances:

Year:  2019        PMID: 30684656     DOI: 10.1016/j.ejps.2019.01.024

Source DB:  PubMed          Journal:  Eur J Pharm Sci        ISSN: 0928-0987            Impact factor:   4.384


  15 in total

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Authors:  Roman Tremmel; Kathrin Klein; Florian Battke; Sarah Fehr; Stefan Winter; Tim Scheurenbrand; Elke Schaeffeler; Saskia Biskup; Matthias Schwab; Ulrich M Zanger
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3.  The genetic landscape of major drug metabolizing cytochrome P450 genes-an updated analysis of population-scale sequencing data.

Authors:  Yitian Zhou; Volker M Lauschke
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Review 4.  In silico toxicology: From structure-activity relationships towards deep learning and adverse outcome pathways.

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Review 5.  Genophenotypic Factors and Pharmacogenomics in Adverse Drug Reactions.

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6.  Copy number variation profiling in pharmacogenetics CYP-450 and GST genes in Colombian population.

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Journal:  BMC Med Genomics       Date:  2019-07-19       Impact factor: 3.063

7.  Interrogation of CYP2D6 Structural Variant Alleles Improves the Correlation Between CYP2D6 Genotype and CYP2D6-Mediated Metabolic Activity.

Authors:  Rachel Dalton; Seung-Been Lee; Katrina G Claw; Bhagwat Prasad; Brian R Phillips; Danny D Shen; Lai Hong Wong; Mitch Fade; Matthew G McDonald; Maitreya J Dunham; Douglas M Fowler; Allan E Rettie; Erin Schuetz; Timothy A Thornton; Deborah A Nickerson; Andrea Gaedigk; Kenneth E Thummel; Erica L Woodahl
Journal:  Clin Transl Sci       Date:  2019-10-25       Impact factor: 4.689

Review 8.  Pharmacogenomics of Antidepressant and Antipsychotic Treatment: How Far Have We Got and Where Are We Going?

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Journal:  Front Psychiatry       Date:  2020-03-12       Impact factor: 4.157

9.  Pharmacogenomic network analysis of the gene-drug interaction landscape underlying drug disposition.

Authors:  Yitian Zhou; Volker M Lauschke
Journal:  Comput Struct Biotechnol J       Date:  2019-12-05       Impact factor: 7.271

10.  Inter-individual and inter-regional variations in enteric drug metabolizing enzyme activities: Results with cryopreserved human intestinal mucosal epithelia (CHIM) from the small intestines of 14 donors.

Authors:  Albert P Li; Ming-Chih D Ho; Novera Alam; Walter Mitchell; Susan Wong; Zhengyin Yan; Jane R Kenny; Cornelis E C A Hop
Journal:  Pharmacol Res Perspect       Date:  2020-10
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