Literature DB >> 30681190

When does a hydrogen bond become a van der Waals interaction? a topological answer.

Christian Tantardini1.   

Abstract

The hydrogen bond (H-bond) is among the most important noncovalent interaction (NCI) for bioorganic compounds. However, no "energy border" has yet been identified to distinguish it from van der Waals (vdW) interaction. Thus, classifying NCIs and interpreting their physical and chemical importance remain open to great subjectivity. In this work, the "energy border" between vdW and H-bonding interactions was identified using a dimer of water, as well as for a series of classical and nonclassical H-bonding systems. Through means of the quantum theory of atoms in molecules and in particular the source function, it was possible to clearly identify the transition from H-bonding to vdW bonding via analysis of the electronic structure. This "energy border" was identified both on elongating the interatomic interaction and by varying the contact angle. Hence, this study also redefines the "critic angle" previously proposed by Galvão et al. (J. Phys. Chem. A 2013, 117, 12668). Consequently, such "energy border" through an analysis of atomic basins volume variation was possible to identify the end of long-range interactions.
© 2019 Wiley Periodicals, Inc. © 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  H-bond; Van der Waals; quantum theory atoms in molecule; source function

Year:  2019        PMID: 30681190     DOI: 10.1002/jcc.25774

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  5 in total

1.  The Volumetric Source Function: Looking Inside van der Waals Interactions.

Authors:  Christian Tantardini; Adam A L Michalchuk; Artem Samtsevich; Carlo Rota; Alexander G Kvashnin
Journal:  Sci Rep       Date:  2020-05-08       Impact factor: 4.379

2.  Modeling of the Van Der Waals Forces during the Adhesion of Capsule-Shaped Bacteria to Flat Surfaces.

Authors:  Fathiah Mohamed Zuki; Robert G J Edyvean; Hamed Pourzolfaghar; Norherdawati Kasim
Journal:  Biomimetics (Basel)       Date:  2021-01-08

3.  Temperature-Induced Change of Water Structure in Aqueous Solutions of Some Kosmotropic and Chaotropic Salts.

Authors:  Ferenc Kovács; Hui Yan; Heng Li; Sándor Kunsági-Máté
Journal:  Int J Mol Sci       Date:  2021-11-29       Impact factor: 5.923

Review 4.  Computer-aided discovery, design, and investigation of COVID-19 therapeutics.

Authors:  Chun-Chun Chang; Hao-Jen Hsu; Tien-Yuan Wu; Je-Wen Liou
Journal:  Tzu Chi Med J       Date:  2022-03-28

5.  Depolarizing Effects in Hydrogen Bond Energy in 310-Helices Revealed by Quantum Chemical Analysis.

Authors:  Hiroko X Kondo; Haruki Nakamura; Yu Takano
Journal:  Int J Mol Sci       Date:  2022-08-12       Impact factor: 6.208

  5 in total

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