Literature DB >> 30674659

Macrosynteny analysis shows the absence of ancient whole-genome duplication in lepidopteran insects.

Yoichiro Nakatani1, Aoife McLysaght1.   

Abstract

Mesh:

Year:  2019        PMID: 30674659      PMCID: PMC6369814          DOI: 10.1073/pnas.1817937116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  9 in total

Review 1.  Yesterday's polyploids and the mystery of diploidization.

Authors:  K H Wolfe
Journal:  Nat Rev Genet       Date:  2001-05       Impact factor: 53.242

Review 2.  Diagnosing duplications--can it be done?

Authors:  Dannie Durand; Rose Hoberman
Journal:  Trends Genet       Date:  2006-01-26       Impact factor: 11.639

3.  Multiple large-scale gene and genome duplications during the evolution of hexapods.

Authors:  Zheng Li; George P Tiley; Sally R Galuska; Chris R Reardon; Thomas I Kidder; Rebecca J Rundell; Michael S Barker
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-19       Impact factor: 11.205

4.  Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.

Authors:  Olivier Jaillon; Jean-Marc Aury; Frédéric Brunet; Jean-Louis Petit; Nicole Stange-Thomann; Evan Mauceli; Laurence Bouneau; Cécile Fischer; Catherine Ozouf-Costaz; Alain Bernot; Sophie Nicaud; David Jaffe; Sheila Fisher; Georges Lutfalla; Carole Dossat; Béatrice Segurens; Corinne Dasilva; Marcel Salanoubat; Michael Levy; Nathalie Boudet; Sergi Castellano; Véronique Anthouard; Claire Jubin; Vanina Castelli; Michael Katinka; Benoît Vacherie; Christian Biémont; Zineb Skalli; Laurence Cattolico; Julie Poulain; Véronique De Berardinis; Corinne Cruaud; Simone Duprat; Philippe Brottier; Jean-Pierre Coutanceau; Jérôme Gouzy; Genis Parra; Guillaume Lardier; Charles Chapple; Kevin J McKernan; Paul McEwan; Stephanie Bosak; Manolis Kellis; Jean-Nicolas Volff; Roderic Guigó; Michael C Zody; Jill Mesirov; Kerstin Lindblad-Toh; Bruce Birren; Chad Nusbaum; Daniel Kahn; Marc Robinson-Rechavi; Vincent Laudet; Vincent Schachter; Francis Quétier; William Saurin; Claude Scarpelli; Patrick Wincker; Eric S Lander; Jean Weissenbach; Hugues Roest Crollius
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

5.  Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae.

Authors:  Manolis Kellis; Bruce W Birren; Eric S Lander
Journal:  Nature       Date:  2004-03-07       Impact factor: 49.962

6.  The genome of a lepidopteran model insect, the silkworm Bombyx mori.

Authors: 
Journal:  Insect Biochem Mol Biol       Date:  2008-12-16       Impact factor: 4.714

7.  Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species.

Authors:  Paul Julian Kersey; James E Allen; Alexis Allot; Matthieu Barba; Sanjay Boddu; Bruce J Bolt; Denise Carvalho-Silva; Mikkel Christensen; Paul Davis; Christoph Grabmueller; Navin Kumar; Zicheng Liu; Thomas Maurel; Ben Moore; Mark D McDowall; Uma Maheswari; Guy Naamati; Victoria Newman; Chuang Kee Ong; Michael Paulini; Helder Pedro; Emily Perry; Matthew Russell; Helen Sparrow; Electra Tapanari; Kieron Taylor; Alessandro Vullo; Gareth Williams; Amonida Zadissia; Andrew Olson; Joshua Stein; Sharon Wei; Marcela Tello-Ruiz; Doreen Ware; Aurelien Luciani; Simon Potter; Robert D Finn; Martin Urban; Kim E Hammond-Kosack; Dan M Bolser; Nishadi De Silva; Kevin L Howe; Nicholas Langridge; Gareth Maslen; Daniel Michael Staines; Andrew Yates
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

8.  Assessing the Performance of Ks Plots for Detecting Ancient Whole Genome Duplications.

Authors:  George P Tiley; Michael S Barker; J Gordon Burleigh
Journal:  Genome Biol Evol       Date:  2018-11-01       Impact factor: 3.416

9.  Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes.

Authors:  Yoichiro Nakatani; Aoife McLysaght
Journal:  Bioinformatics       Date:  2017-07-15       Impact factor: 6.937

  9 in total
  12 in total

1.  Model-Based Detection of Whole-Genome Duplications in a Phylogeny.

Authors:  Arthur Zwaenepoel; Yves Van de Peer
Journal:  Mol Biol Evol       Date:  2020-09-01       Impact factor: 16.240

2.  Reply to Nakatani and McLysaght: Analyzing deep duplication events.

Authors:  Zheng Li; George P Tiley; Rebecca J Rundell; Michael S Barker
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-23       Impact factor: 11.205

3.  The evolution of insect metallothioneins.

Authors:  Mei Luo; Cédric Finet; Haosu Cong; Hong-Yi Wei; Henry Chung
Journal:  Proc Biol Sci       Date:  2020-10-28       Impact factor: 5.349

Review 4.  Speciation through chromosomal fusion and fission in Lepidoptera.

Authors:  Jurriaan M de Vos; Hannah Augustijnen; Livio Bätscher; Kay Lucek
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-07-13       Impact factor: 6.237

5.  Origin of horsetails and the role of whole-genome duplication in plant macroevolution.

Authors:  James W Clark; Mark N Puttick; Philip C J Donoghue
Journal:  Proc Biol Sci       Date:  2019-10-30       Impact factor: 5.349

6.  A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens.

Authors:  Juan Viruel; María Conejero; Oriane Hidalgo; Lisa Pokorny; Robyn F Powell; Félix Forest; Michael B Kantar; Marybel Soto Gomez; Sean W Graham; Barbara Gravendeel; Paul Wilkin; Ilia J Leitch
Journal:  Front Plant Sci       Date:  2019-07-24       Impact factor: 5.753

7.  Gene Family Evolution in the Pea Aphid Based on Chromosome-Level Genome Assembly.

Authors:  Yiyuan Li; Hyunjin Park; Thomas E Smith; Nancy A Moran
Journal:  Mol Biol Evol       Date:  2019-10-01       Impact factor: 16.240

8.  The lasting after-effects of an ancient polyploidy on the genomes of teleosts.

Authors:  Gavin C Conant
Journal:  PLoS One       Date:  2020-04-16       Impact factor: 3.240

9.  Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution.

Authors:  Dick Roelofs; Arthur Zwaenepoel; Tom Sistermans; Joey Nap; Andries A Kampfraath; Yves Van de Peer; Jacintha Ellers; Ken Kraaijeveld
Journal:  BMC Biol       Date:  2020-05-27       Impact factor: 7.431

10.  Chromosome number evolves at equal rates in holocentric and monocentric clades.

Authors:  Sarah N Ruckman; Michelle M Jonika; Claudio Casola; Heath Blackmon
Journal:  PLoS Genet       Date:  2020-10-13       Impact factor: 5.917

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