Literature DB >> 30673608

Structural Basis of Karrikin and Non-natural Strigolactone Perception in Physcomitrella patens.

Marco Bürger1, Kiyoshi Mashiguchi2, Hyun Jee Lee1, Misaki Nakano2, Kodai Takemoto2, Yoshiya Seto3, Shinjiro Yamaguchi4, Joanne Chory5.   

Abstract

In plants, strigolactones are perceived by the dual receptor-hydrolase DWARF14 (D14). D14 belongs to the superfamily of α/β hydrolases and is structurally similar to the karrikin receptor KARRIKIN INSENSITIVE 2 (KAI2). The moss Physcomitrella patens is an ideal model system for studying this receptor family, because it includes 11 highly related family members with unknown ligand specificity. We present the crystal structures of three Physcomitrella D14/KAI2-like proteins and describe a loop-based mechanism that leads to a permanent widening of the hydrophobic substrate gorge. We have identified protein clades that specifically perceive the karrikin KAR1 and the non-natural strigolactone isomer (-)-5-deoxystrigol in a highly stereoselective manner.
Copyright © 2019 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Physcomitrella patens; karrikin; strigolactone; α/β hydrolases

Mesh:

Substances:

Year:  2019        PMID: 30673608      PMCID: PMC7233462          DOI: 10.1016/j.celrep.2019.01.003

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  63 in total

1.  A Selaginella moellendorffii Ortholog of KARRIKIN INSENSITIVE2 Functions in Arabidopsis Development but Cannot Mediate Responses to Karrikins or Strigolactones.

Authors:  Mark T Waters; Adrian Scaffidi; Solène L Y Moulin; Yueming K Sun; Gavin R Flematti; Steven M Smith
Journal:  Plant Cell       Date:  2015-07-14       Impact factor: 11.277

2.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

3.  Strigolactone Hormones and Their Stereoisomers Signal through Two Related Receptor Proteins to Induce Different Physiological Responses in Arabidopsis.

Authors:  Adrian Scaffidi; Mark T Waters; Yueming K Sun; Brian W Skelton; Kingsley W Dixon; Emilio L Ghisalberti; Gavin R Flematti; Steven M Smith
Journal:  Plant Physiol       Date:  2014-05-07       Impact factor: 8.340

4.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

5.  Dali server: conservation mapping in 3D.

Authors:  Liisa Holm; Päivi Rosenström
Journal:  Nucleic Acids Res       Date:  2010-05-10       Impact factor: 16.971

6.  PLANT EVOLUTION. Convergent evolution of strigolactone perception enabled host detection in parasitic plants.

Authors:  Caitlin E Conn; Rohan Bythell-Douglas; Drexel Neumann; Satoko Yoshida; Bryan Whittington; James H Westwood; Ken Shirasu; Charles S Bond; Kelly A Dyer; David C Nelson
Journal:  Science       Date:  2015-07-31       Impact factor: 47.728

7.  Presenting your structures: the CCP4mg molecular-graphics software.

Authors:  S McNicholas; E Potterton; K S Wilson; M E M Noble
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

8.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

9.  ProteinsPlus: a web portal for structure analysis of macromolecules.

Authors:  Rainer Fährrolfes; Stefan Bietz; Florian Flachsenberg; Agnes Meyder; Eva Nittinger; Thomas Otto; Andrea Volkamer; Matthias Rarey
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  22 in total

1.  Karrikin Signaling Acts Parallel to and Additively with Strigolactone Signaling to Regulate Rice Mesocotyl Elongation in Darkness.

Authors:  Jianshu Zheng; Kai Hong; Longjun Zeng; Lei Wang; Shujing Kang; Minghao Qu; Jiarong Dai; Linyuan Zou; Lixin Zhu; Zhanpeng Tang; Xiangbing Meng; Bing Wang; Jiang Hu; Dali Zeng; Yonghui Zhao; Peng Cui; Quan Wang; Qian Qian; Yonghong Wang; Jiayang Li; Guosheng Xiong
Journal:  Plant Cell       Date:  2020-07-14       Impact factor: 11.277

Review 2.  Structural Aspects of Plant Hormone Signal Perception and Regulation by Ubiquitin Ligases.

Authors:  Lior Tal; M Ximena Anleu Gil; Angelica M Guercio; Nitzan Shabek
Journal:  Plant Physiol       Date:  2020-01-09       Impact factor: 8.340

3.  Structure-Function Analysis of SMAX1 Reveals Domains That Mediate Its Karrikin-Induced Proteolysis and Interaction with the Receptor KAI2.

Authors:  Aashima Khosla; Nicholas Morffy; Qingtian Li; Lionel Faure; Sun Hyun Chang; Jiaren Yao; Jiameng Zheng; Mei L Cai; John Stanga; Gavin R Flematti; Mark T Waters; David C Nelson
Journal:  Plant Cell       Date:  2020-05-20       Impact factor: 11.277

4.  Catabolism of strigolactones by a carboxylesterase.

Authors:  Enjun Xu; Liang Chai; Shiqi Zhang; Ruixue Yu; Xixi Zhang; Chongyi Xu; Yuxin Hu
Journal:  Nat Plants       Date:  2021-11-11       Impact factor: 15.793

5.  A KARRIKIN INSENSITIVE2 paralog in lettuce mediates highly sensitive germination responses to karrikinolide.

Authors:  Stephanie E Martinez; Caitlin E Conn; Angelica M Guercio; Claudia Sepulveda; Christopher J Fiscus; Daniel Koenig; Nitzan Shabek; David C Nelson
Journal:  Plant Physiol       Date:  2022-09-28       Impact factor: 8.005

6.  The karrikin signaling regulator SMAX1 controls Lotus japonicus root and root hair development by suppressing ethylene biosynthesis.

Authors:  Samy Carbonnel; Debatosh Das; Kartikye Varshney; Markus C Kolodziej; José A Villaécija-Aguilar; Caroline Gutjahr
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-17       Impact factor: 11.205

Review 7.  The Many Models of Strigolactone Signaling.

Authors:  Marco Bürger; Joanne Chory
Journal:  Trends Plant Sci       Date:  2020-01-13       Impact factor: 18.313

8.  Major components of the KARRIKIN INSENSITIVE2-dependent signaling pathway are conserved in the liverwort Marchantia polymorpha.

Authors:  Yohei Mizuno; Aino Komatsu; Shota Shimazaki; Satoshi Naramoto; Keisuke Inoue; Xiaonan Xie; Kimitsune Ishizaki; Takayuki Kohchi; Junko Kyozuka
Journal:  Plant Cell       Date:  2021-08-13       Impact factor: 11.277

9.  Three mutations repurpose a plant karrikin receptor to a strigolactone receptor.

Authors:  Amir Arellano-Saab; Michael Bunsick; Hasan Al Galib; Wenda Zhao; Stefan Schuetz; James Michael Bradley; Zhenhua Xu; Claresta Adityani; Asrinus Subha; Hayley McKay; Alexandre de Saint Germain; François-Didier Boyer; Christopher S P McErlean; Shigeo Toh; Peter McCourt; Peter J Stogios; Shelley Lumba
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

Review 10.  The mechanism of host-induced germination in root parasitic plants.

Authors:  David C Nelson
Journal:  Plant Physiol       Date:  2021-04-23       Impact factor: 8.340

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