Literature DB >> 30670796

Errors in long-read assemblies can critically affect protein prediction.

Mick Watson1, Amanda Warr2.   

Abstract

Mesh:

Year:  2019        PMID: 30670796     DOI: 10.1038/s41587-018-0004-z

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  66 in total

Review 1.  Long-read human genome sequencing and its applications.

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2.  A high-throughput multiplexing and selection strategy to complete bacterial genomes.

Authors:  Sergio Arredondo-Alonso; Anna K Pöntinen; François Cléon; Rebecca A Gladstone; Anita C Schürch; Pål J Johnsen; Ørjan Samuelsen; Jukka Corander
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Review 4.  Recent advances and future perspectives in vector-omics.

Authors:  Austin Compton; Igor V Sharakhov; Zhijian Tu
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5.  TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads.

Authors:  Mengyang Xu; Lidong Guo; Shengqiang Gu; Ou Wang; Rui Zhang; Brock A Peters; Guangyi Fan; Xin Liu; Xun Xu; Li Deng; Yongwei Zhang
Journal:  Gigascience       Date:  2020-09-01       Impact factor: 6.524

Review 6.  Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology.

Authors:  Leho Tedersoo; Mads Albertsen; Sten Anslan; Benjamin Callahan
Journal:  Appl Environ Microbiol       Date:  2021-08-11       Impact factor: 4.792

Review 7.  Genomic Tackling of Human Satellite DNA: Breaking Barriers through Time.

Authors:  Mariana Lopes; Sandra Louzada; Margarida Gama-Carvalho; Raquel Chaves
Journal:  Int J Mol Sci       Date:  2021-04-29       Impact factor: 5.923

8.  Investigating the impact of reference assembly choice on genomic analyses in a cattle breed.

Authors:  Audald Lloret-Villas; Meenu Bhati; Naveen Kumar Kadri; Ruedi Fries; Hubert Pausch
Journal:  BMC Genomics       Date:  2021-05-19       Impact factor: 3.969

9.  Re-examination of two diatom reference genomes using long-read sequencing.

Authors:  Gina V Filloramo; Bruce A Curtis; Emma Blanche; John M Archibald
Journal:  BMC Genomics       Date:  2021-05-24       Impact factor: 3.969

10.  Improved assembly and variant detection of a haploid human genome using single-molecule, high-fidelity long reads.

Authors:  Mitchell R Vollger; Glennis A Logsdon; Peter A Audano; Arvis Sulovari; David Porubsky; Paul Peluso; Aaron M Wenger; Gregory T Concepcion; Zev N Kronenberg; Katherine M Munson; Carl Baker; Ashley D Sanders; Diana C J Spierings; Peter M Lansdorp; Urvashi Surti; Michael W Hunkapiller; Evan E Eichler
Journal:  Ann Hum Genet       Date:  2019-11-11       Impact factor: 1.670

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