Literature DB >> 30666867

Synthetic Pattern Formation.

Nan Luo1, Shangying Wang1, Lingchong You1,2,3.   

Abstract

A fundamental question in biology is how biological patterns emerge. Because of the presence of numerous confounding factors, it is tremendously challenging to elucidate the mechanisms underlying pattern formation solely on the basis of studies of natural biological systems. Synthetic biology provides a complementary approach to investigating pattern formation by creating systems that are simpler and more controllable than their natural counterparts. In this Perspective, we summarize recent work on synthetic systems that generate spatial patterns, review the tools for building synthetic patterns, and discuss future directions of studying pattern formation with synthetic biology.

Year:  2019        PMID: 30666867     DOI: 10.1021/acs.biochem.8b01242

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  6 in total

Review 1.  Synthetic spatial patterning in bacteria: advances based on novel diffusible signals.

Authors:  Martina Oliver Huidobro; Jure Tica; Georg K A Wachter; Mark Isalan
Journal:  Microb Biotechnol       Date:  2021-11-29       Impact factor: 6.575

2.  Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch.

Authors:  Içvara Barbier; Rubén Perez-Carrasco; Yolanda Schaerli
Journal:  Mol Syst Biol       Date:  2020-06       Impact factor: 11.429

3.  Massive computational acceleration by using neural networks to emulate mechanism-based biological models.

Authors:  Shangying Wang; Kai Fan; Nan Luo; Yangxiaolu Cao; Feilun Wu; Carolyn Zhang; Katherine A Heller; Lingchong You
Journal:  Nat Commun       Date:  2019-09-25       Impact factor: 14.919

Review 4.  Pattern formation mechanisms of self-organizing reaction-diffusion systems.

Authors:  Amit N Landge; Benjamin M Jordan; Xavier Diego; Patrick Müller
Journal:  Dev Biol       Date:  2020-01-30       Impact factor: 3.582

5.  Reversible thermal regulation for bifunctional dynamic control of gene expression in Escherichia coli.

Authors:  Xuan Wang; Jia-Ning Han; Xu Zhang; Yue-Yuan Ma; Yina Lin; Huan Wang; Dian-Jie Li; Tao-Ran Zheng; Fu-Qing Wu; Jian-Wen Ye; Guo-Qiang Chen
Journal:  Nat Commun       Date:  2021-03-03       Impact factor: 14.919

6.  Cell-in-the-loop pattern formation with optogenetically emulated cell-to-cell signaling.

Authors:  Melinda Liu Perkins; Dirk Benzinger; Murat Arcak; Mustafa Khammash
Journal:  Nat Commun       Date:  2020-03-13       Impact factor: 14.919

  6 in total

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