Literature DB >> 30662373

Simultaneous Clustering and Estimation of Heterogeneous Graphical Models.

Botao Hao1, Will Wei Sun2, Yufeng Liu3, Guang Cheng1.   

Abstract

We consider joint estimation of multiple graphical models arising from heterogeneous and high-dimensional observations. Unlike most previous approaches which assume that the cluster structure is given in advance, an appealing feature of our method is to learn cluster structure while estimating heterogeneous graphical models. This is achieved via a high dimensional version of Expectation Conditional Maximization (ECM) algorithm (Meng and Rubin, 1993). A joint graphical lasso penalty is imposed on the conditional maximization step to extract both homogeneity and heterogeneity components across all clusters. Our algorithm is computationally efficient due to fast sparse learning routines and can be implemented without unsupervised learning knowledge. The superior performance of our method is demonstrated by extensive experiments and its application to a Glioblastoma cancer dataset reveals some new insights in understanding the Glioblastoma cancer. In theory, a non-asymptotic error bound is established for the output directly from our high dimensional ECM algorithm, and it consists of two quantities: statistical error (statistical accuracy) and optimization error (computational complexity). Such a result gives a theoretical guideline in terminating our ECM iterations.

Entities:  

Keywords:  Clustering; finite-sample analysis; graphical models; high-dimensional statistics; non-convex optimization

Year:  2018        PMID: 30662373      PMCID: PMC6338433     

Source DB:  PubMed          Journal:  J Mach Learn Res        ISSN: 1532-4435            Impact factor:   3.654


  9 in total

1.  Integrating approximate single factor graphical models.

Authors:  Xinyan Fan; Kuangnan Fang; Shuangge Ma; Qingzhao Zhang
Journal:  Stat Med       Date:  2019-11-20       Impact factor: 2.373

2.  Bayesian Edge Regression in Undirected Graphical Models to Characterize Interpatient Heterogeneity in Cancer.

Authors:  Zeya Wang; Ahmed O Kaseb; Hesham M Amin; Manal M Hassan; Wenyi Wang; Jeffrey S Morris
Journal:  J Am Stat Assoc       Date:  2022-01-05       Impact factor: 4.369

3.  Network-based cancer heterogeneity analysis incorporating multi-view of prior information.

Authors:  Yang Li; Shaodong Xu; Shuangge Ma; Mengyun Wu
Journal:  Bioinformatics       Date:  2022-05-13       Impact factor: 6.931

4.  Bayesian inference of networks across multiple sample groups and data types.

Authors:  Elin Shaddox; Christine B Peterson; Francesco C Stingo; Nicola A Hanania; Charmion Cruickshank-Quinn; Katerina Kechris; Russell Bowler; Marina Vannucci
Journal:  Biostatistics       Date:  2020-07-01       Impact factor: 5.899

5.  HeteroGGM: an R package for Gaussian graphical model-based heterogeneity analysis.

Authors:  Mingyang Ren; Sanguo Zhang; Qingzhao Zhang; Shuangge Ma
Journal:  Bioinformatics       Date:  2021-02-26       Impact factor: 6.937

6.  Penalized model-based clustering of fMRI data.

Authors:  Andrew Dilernia; Karina Quevedo; Jazmin Camchong; Kelvin Lim; Wei Pan; Lin Zhang
Journal:  Biostatistics       Date:  2022-07-18       Impact factor: 5.279

7.  Bayesian Joint Spike-and-Slab Graphical Lasso.

Authors:  Zehang Richard Li; Tyler H McCormick; Samuel J Clark
Journal:  Proc Mach Learn Res       Date:  2019-06

8.  Gaussian graphical model-based heterogeneity analysis via penalized fusion.

Authors:  Mingyang Ren; Sanguo Zhang; Qingzhao Zhang; Shuangge Ma
Journal:  Biometrics       Date:  2021-02-05       Impact factor: 1.701

9.  INTEGRATIVE NETWORK LEARNING FOR MULTI-MODALITY BIOMARKER DATA.

Authors:  Shanghong Xie; Donglin Zeng; Yuanjia Wang
Journal:  Ann Appl Stat       Date:  2021-03-18       Impact factor: 2.083

  9 in total

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