Literature DB >> 30661990

Directed Non-targeted Mass Spectrometry and Chemical Networking for Discovery of Eicosanoids and Related Oxylipins.

Jeramie D Watrous1, Teemu J Niiranen2, Kim A Lagerborg1, Mir Henglin3, Yong-Jiang Xu1, Jian Rong4, Sonia Sharma5, Ramachandran S Vasan6, Martin G Larson4, Aaron Armando7, Samia Mora8, Oswald Quehenberger1, Edward A Dennis7, Susan Cheng9, Mohit Jain10.   

Abstract

Eicosanoids and related oxylipins are critical, small bioactive mediators of human physiology and inflammation. While ∼1,100 distinct species have been predicted to exist, to date, less than 150 of these molecules have been measured in humans, limiting our understanding of their role in human biology. Using a directed non-targeted mass spectrometry approach in conjunction with chemical networking of spectral fragmentation patterns, we find over 500 discrete chemical signals highly consistent with known and putative eicosanoids and related oxylipins in human plasma including 46 putative molecules not previously described. In plasma samples from 1,500 individuals, we find members of this expanded oxylipin library hold close association with markers of inflammation, as well as clinical characteristics linked with inflammation, including advancing age and obesity. These experimental and computational approaches enable discovery of new chemical entities and will shed important insight into the role of bioactive molecules in human health and disease.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  GNPS; directed non-targeted metabolomics; eicosanoids; mass spectrometry; oxylipins; spectral networking

Mesh:

Substances:

Year:  2019        PMID: 30661990      PMCID: PMC6636917          DOI: 10.1016/j.chembiol.2018.11.015

Source DB:  PubMed          Journal:  Cell Chem Biol        ISSN: 2451-9448            Impact factor:   8.116


  60 in total

Review 1.  Mixed messages: modulation of inflammation and immune responses by prostaglandins and thromboxanes.

Authors:  S L Tilley; T M Coffman; B H Koller
Journal:  J Clin Invest       Date:  2001-07       Impact factor: 14.808

2.  The use of mass defect in modern mass spectrometry.

Authors:  Lekha Sleno
Journal:  J Mass Spectrom       Date:  2012-02       Impact factor: 1.982

Review 3.  Electrospray ionization and tandem mass spectrometry of eicosanoids.

Authors:  Robert C Murphy; Robert M Barkley; Karin Zemski Berry; Joseph Hankin; Kathleen Harrison; Chris Johnson; Jessica Krank; Andrew McAnoy; Charis Uhlson; Simona Zarini
Journal:  Anal Biochem       Date:  2005-11-01       Impact factor: 3.365

4.  Electrospray ionization and low energy tandem mass spectrometry of polyhydroxy unsaturated fatty acids.

Authors:  P Wheelan; J A Zirrolli; R C Murphy
Journal:  J Am Soc Mass Spectrom       Date:  1996-02       Impact factor: 3.109

Review 5.  Eicosanoid storm in infection and inflammation.

Authors:  Edward A Dennis; Paul C Norris
Journal:  Nat Rev Immunol       Date:  2015-07-03       Impact factor: 53.106

6.  A role of oxidative stress-generated eicosanoid in the progression of arteriosclerosis in type 2 diabetes mellitus model rats.

Authors:  Kaori Shinomiya; Megumu Fukunaga; Hideyasu Kiyomoto; Katsufumi Mizushige; Teppei Tsuji; Takahisa Noma; Koji Ohmori; Masakazu Kohno; Shoichi Senda
Journal:  Hypertens Res       Date:  2002-01       Impact factor: 3.872

7.  Structural characterization of monohydroxyeicosatetraenoic acids and dihydroxy- and trihydroxyeicosatrienoic acids by ESI-FTICR.

Authors:  Lijie Cui; Marilyn A Isbell; Yuttana Chawengsub; John R Falck; William B Campbell; Kasem Nithipatikom
Journal:  J Am Soc Mass Spectrom       Date:  2008-01-31       Impact factor: 3.109

8.  Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Authors:  Mingxun Wang; Jeremy J Carver; Vanessa V Phelan; Laura M Sanchez; Neha Garg; Yao Peng; Don Duy Nguyen; Jeramie Watrous; Clifford A Kapono; Tal Luzzatto-Knaan; Carla Porto; Amina Bouslimani; Alexey V Melnik; Michael J Meehan; Wei-Ting Liu; Max Crüsemann; Paul D Boudreau; Eduardo Esquenazi; Mario Sandoval-Calderón; Roland D Kersten; Laura A Pace; Robert A Quinn; Katherine R Duncan; Cheng-Chih Hsu; Dimitrios J Floros; Ronnie G Gavilan; Karin Kleigrewe; Trent Northen; Rachel J Dutton; Delphine Parrot; Erin E Carlson; Bertrand Aigle; Charlotte F Michelsen; Lars Jelsbak; Christian Sohlenkamp; Pavel Pevzner; Anna Edlund; Jeffrey McLean; Jörn Piel; Brian T Murphy; Lena Gerwick; Chih-Chuang Liaw; Yu-Liang Yang; Hans-Ulrich Humpf; Maria Maansson; Robert A Keyzers; Amy C Sims; Andrew R Johnson; Ashley M Sidebottom; Brian E Sedio; Andreas Klitgaard; Charles B Larson; Cristopher A Boya P; Daniel Torres-Mendoza; David J Gonzalez; Denise B Silva; Lucas M Marques; Daniel P Demarque; Egle Pociute; Ellis C O'Neill; Enora Briand; Eric J N Helfrich; Eve A Granatosky; Evgenia Glukhov; Florian Ryffel; Hailey Houson; Hosein Mohimani; Jenan J Kharbush; Yi Zeng; Julia A Vorholt; Kenji L Kurita; Pep Charusanti; Kerry L McPhail; Kristian Fog Nielsen; Lisa Vuong; Maryam Elfeki; Matthew F Traxler; Niclas Engene; Nobuhiro Koyama; Oliver B Vining; Ralph Baric; Ricardo R Silva; Samantha J Mascuch; Sophie Tomasi; Stefan Jenkins; Venkat Macherla; Thomas Hoffman; Vinayak Agarwal; Philip G Williams; Jingqui Dai; Ram Neupane; Joshua Gurr; Andrés M C Rodríguez; Anne Lamsa; Chen Zhang; Kathleen Dorrestein; Brendan M Duggan; Jehad Almaliti; Pierre-Marie Allard; Prasad Phapale; Louis-Felix Nothias; Theodore Alexandrov; Marc Litaudon; Jean-Luc Wolfender; Jennifer E Kyle; Thomas O Metz; Tyler Peryea; Dac-Trung Nguyen; Danielle VanLeer; Paul Shinn; Ajit Jadhav; Rolf Müller; Katrina M Waters; Wenyuan Shi; Xueting Liu; Lixin Zhang; Rob Knight; Paul R Jensen; Bernhard O Palsson; Kit Pogliano; Roger G Linington; Marcelino Gutiérrez; Norberto P Lopes; William H Gerwick; Bradley S Moore; Pieter C Dorrestein; Nuno Bandeira
Journal:  Nat Biotechnol       Date:  2016-08-09       Impact factor: 54.908

9.  HMDB 4.0: the human metabolome database for 2018.

Authors:  David S Wishart; Yannick Djoumbou Feunang; Ana Marcu; An Chi Guo; Kevin Liang; Rosa Vázquez-Fresno; Tanvir Sajed; Daniel Johnson; Carin Li; Naama Karu; Zinat Sayeeda; Elvis Lo; Nazanin Assempour; Mark Berjanskii; Sandeep Singhal; David Arndt; Yonjie Liang; Hasan Badran; Jason Grant; Arnau Serra-Cayuela; Yifeng Liu; Rupa Mandal; Vanessa Neveu; Allison Pon; Craig Knox; Michael Wilson; Claudine Manach; Augustin Scalbert
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

10.  CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra.

Authors:  Felicity Allen; Allison Pon; Michael Wilson; Russ Greiner; David Wishart
Journal:  Nucleic Acids Res       Date:  2014-06-03       Impact factor: 16.971

View more
  18 in total

1.  Enhancing fatty acid oxidation negatively regulates PPARs signaling in the heart.

Authors:  ZhengLong Liu; Jeffrey Ding; Timothy S McMillen; Outi Villet; Rong Tian; Dan Shao
Journal:  J Mol Cell Cardiol       Date:  2020-06-24       Impact factor: 5.000

2.  Deep Neural Networks for Classification of LC-MS Spectral Peaks.

Authors:  Edward D Kantz; Saumya Tiwari; Jeramie D Watrous; Susan Cheng; Mohit Jain
Journal:  Anal Chem       Date:  2019-09-19       Impact factor: 6.986

3.  Association of Physical Activity With Bioactive Lipids and Cardiovascular Events.

Authors:  Rosangela A Hoshi; Yanyan Liu; Mohit Jain; Daniel I Chasman; Olga V Demler; Samia Mora; Heike Luttmann-Gibson; Saumya Tiwari; Franco Giulianini; Allen M Andres; Jeramie D Watrous; Nancy R Cook; Karen H Costenbader; Olivia I Okereke; Paul M Ridker; JoAnn E Manson; I-Min Lee; Manickavasagar Vinayagamoorthy; Susan Cheng; Trisha Copeland
Journal:  Circ Res       Date:  2022-07-19       Impact factor: 23.213

4.  Biliopancreatic Diversion Induces Greater Metabolic Improvement Than Roux-en-Y Gastric Bypass.

Authors:  Lydia-Ann Harris; Brandon D Kayser; Consuelo Cefalo; Luca Marini; Jeramie D Watrous; Jeffrey Ding; Mohit Jain; Jeffrey G McDonald; Bonne M Thompson; Elisa Fabbrini; J Christopher Eagon; Bruce W Patterson; Bettina Mittendorfer; Geltrude Mingrone; Samuel Klein
Journal:  Cell Metab       Date:  2019-10-03       Impact factor: 27.287

5.  Nontargeted mass spectrometry of dried blood spots for interrogation of the human circulating metabolome.

Authors:  Casey Ward; Shriram Nallamshetty; Jeramie D Watrous; Eowyn Acres; Tao Long; Ian T Mathews; Sonia Sharma; Susan Cheng; Farhad Imam; Mohit Jain
Journal:  J Mass Spectrom       Date:  2021-05-27       Impact factor: 2.394

6.  Reproducible molecular networking of untargeted mass spectrometry data using GNPS.

Authors:  Allegra T Aron; Emily C Gentry; Kerry L McPhail; Louis-Félix Nothias; Mélissa Nothias-Esposito; Amina Bouslimani; Daniel Petras; Julia M Gauglitz; Nicole Sikora; Fernando Vargas; Justin J J van der Hooft; Madeleine Ernst; Kyo Bin Kang; Christine M Aceves; Andrés Mauricio Caraballo-Rodríguez; Irina Koester; Kelly C Weldon; Samuel Bertrand; Catherine Roullier; Kunyang Sun; Richard M Tehan; Cristopher A Boya P; Martin H Christian; Marcelino Gutiérrez; Aldo Moreno Ulloa; Javier Andres Tejeda Mora; Randy Mojica-Flores; Johant Lakey-Beitia; Victor Vásquez-Chaves; Yilue Zhang; Angela I Calderón; Nicole Tayler; Robert A Keyzers; Fidele Tugizimana; Nombuso Ndlovu; Alexander A Aksenov; Alan K Jarmusch; Robin Schmid; Andrew W Truman; Nuno Bandeira; Mingxun Wang; Pieter C Dorrestein
Journal:  Nat Protoc       Date:  2020-05-13       Impact factor: 17.021

Review 7.  Bioactive Lipid Signaling in Cardiovascular Disease, Development, and Regeneration.

Authors:  Aaron H Wasserman; Manigandan Venkatesan; Aitor Aguirre
Journal:  Cells       Date:  2020-06-03       Impact factor: 6.600

8.  Isoprostanoid Profiling of Marine Microalgae.

Authors:  Claire Vigor; Camille Oger; Guillaume Reversat; Amandine Rocher; Bingqing Zhou; Amandyne Linares-Maurizi; Alexandre Guy; Valérie Bultel-Poncé; Jean-Marie Galano; Joseph Vercauteren; Thierry Durand; Philippe Potin; Thierry Tonon; Catherine Leblanc
Journal:  Biomolecules       Date:  2020-07-18

9.  A metabolomics pipeline for the mechanistic interrogation of the gut microbiome.

Authors:  Shuo Han; Will Van Treuren; Curt R Fischer; Bryan D Merrill; Brian C DeFelice; Juan M Sanchez; Steven K Higginbottom; Leah Guthrie; Lalla A Fall; Dylan Dodd; Michael A Fischbach; Justin L Sonnenburg
Journal:  Nature       Date:  2021-07-14       Impact factor: 49.962

10.  Integration of metabolomics, genomics, and immune phenotypes reveals the causal roles of metabolites in disease.

Authors:  Xiaojing Chu; Martin Jaeger; Cisca Wijmenga; Mihai G Netea; Yang Li; Joep Beumer; Olivier B Bakker; Raul Aguirre-Gamboa; Marije Oosting; Sanne P Smeekens; Simone Moorlag; Vera P Mourits; Valerie A C M Koeken; Charlotte de Bree; Trees Jansen; Ian T Mathews; Khoi Dao; Mahan Najhawan; Jeramie D Watrous; Irma Joosten; Sonia Sharma; Hans J P M Koenen; Sebo Withoff; Iris H Jonkers; Romana T Netea-Maier; Ramnik J Xavier; Lude Franke; Cheng-Jian Xu; Leo A B Joosten; Serena Sanna; Mohit Jain; Vinod Kumar; Hans Clevers
Journal:  Genome Biol       Date:  2021-07-06       Impact factor: 13.583

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.