Literature DB >> 30661654

Complexity of genome sequencing and reporting: Next generation sequencing (NGS) technologies and implementation of precision medicine in real life.

Stefania Morganti1, Paolo Tarantino1, Emanuela Ferraro1, Paolo D'Amico1, Giulia Viale1, Dario Trapani1, Bruno Achutti Duso1, Giuseppe Curigliano2.   

Abstract

The finalization of the Human Genome Project in 2003 paved the way for a deeper understanding of cancer, favouring a faster progression towards "personalized" medicine. Research in oncology has progressively focused on the sequencing of cancer genomes, to better understand the genetic basis of tumorigenesis and identify actionable alterations to guide cancer therapy. Thanks to the development of next-generation-sequencing (NGS) techniques, sequencing of tumoral DNA is today technically easier, faster and cheaper. Commercially available NGS panels enable the detection of single or global genomic alterations, namely gene mutation and mutagenic burden, both on germline and somatic DNA, potentially predicting the response or resistance to cancer treatments. Profiling of tumor DNA is nowadays a standard in cancer research and treatment. In this review we discuss the history, techniques and applications of NGS in cancer care, under a "personalized tailored therapy" perspective.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Driver mutations; Liquid biopsy; Next generation sequencing; Precision medicine; Predictive biomarkers; Tumor heterogeneity; Tumor mutational burden

Mesh:

Year:  2018        PMID: 30661654     DOI: 10.1016/j.critrevonc.2018.11.008

Source DB:  PubMed          Journal:  Crit Rev Oncol Hematol        ISSN: 1040-8428            Impact factor:   6.312


  23 in total

Review 1.  Emerging Role of Genomics and Cell-Free DNA in Breast Cancer.

Authors:  Lorenzo Gerratana; Andrew A Davis; Ami N Shah; Chenyu Lin; Carla Corvaja; Massimo Cristofanilli
Journal:  Curr Treat Options Oncol       Date:  2019-06-29

Review 2.  Use of Quantitative Metagenomics Next-Generation Sequencing to Confirm Fever of Unknown Origin and Infectious Disease.

Authors:  Yuxin Dong; Yulei Gao; Yanfen Chai; Songtao Shou
Journal:  Front Microbiol       Date:  2022-07-04       Impact factor: 6.064

3.  Comparison of Next-Generation Sequencing and Ventana Immunohistochemistry in Detecting ALK Rearrangements and Predicting the Efficacy of First-Line Crizotinib in Patients with Advanced Non-Small Cell Lung Cancer.

Authors:  Liang Zeng; Yizhi Li; Qinqin Xu; Nong Yang; Zhenxing Wang; Wenjuan Jiang; Analyn Lizaso; Xinru Mao; Yongchang Zhang
Journal:  Onco Targets Ther       Date:  2020-07-22       Impact factor: 4.147

4.  Validation and clinical application of a targeted next-generation sequencing gene panel for solid and hematologic malignancies.

Authors:  Iván Prieto-Potin; Nerea Carvajal; Jenifer Plaza-Sánchez; Rebeca Manso; Carmen Laura Aúz-Alexandre; Cristina Chamizo; Sandra Zazo; Almudena López-Sánchez; Socorro María Rodríguez-Pinilla; Laura Camacho; Raquel Longarón; Beatriz Bellosillo; Rosa Somoza; Javier Hernández-Losa; Víctor Manuel Fernández-Soria; Ricardo Ramos-Ruiz; Ion Cristóbal; Jesús García-Foncillas; Federico Rojo
Journal:  PeerJ       Date:  2020-10-06       Impact factor: 2.984

Review 5.  Perspectives for circulating tumor DNA in clinical management of colorectal cancer.

Authors:  Ichiro Takemasa; Atsushi Hamabe; Masayuki Ishii
Journal:  Int J Clin Oncol       Date:  2021-06-29       Impact factor: 3.402

Review 6.  Precision Medicine in Lymphoma by Innovative Instrumental Platforms.

Authors:  Antonello Di Paolo; Elena Arrigoni; Giacomo Luci; Federico Cucchiara; Romano Danesi; Sara Galimberti
Journal:  Front Oncol       Date:  2019-12-17       Impact factor: 6.244

Review 7.  Nano-Enhanced Cancer Immunotherapy: Immunology Encounters Nanotechnology.

Authors:  Ernesto Bockamp; Sebastian Rosigkeit; Dominik Siegl; Detlef Schuppan
Journal:  Cells       Date:  2020-09-15       Impact factor: 6.600

8.  Oncologist Confidence in Genomic Testing and Implications for Using Multimarker Tumor Panel Tests in Practice.

Authors:  Janet S de Moor; Stacy W Gray; Sandra A Mitchell; Carrie N Klabunde; Andrew N Freedman
Journal:  JCO Precis Oncol       Date:  2020-06-11

9.  Adopting solutions for annotation and reporting of next generation sequencing in clinical practice.

Authors:  Jinming Song; Mohammad Hussaini
Journal:  Pract Lab Med       Date:  2020-02-10

10.  Case Report: A Chronological Combination Treatment of Icotinib, Osimertinib, and Crizotinib on Lung Adenocarcinoma Guided by Serial Genetic Tests of Circulating Tumor DNA and Sediment Cell Genomic DNA From Pleural Effusion.

Authors:  Zhihua Miao; Tianhao Mu; Longying Liu; Jingjie Rao; Min Jin; Zhizheng Wang; Hui Wang; Chao Lu; Xiaolin Gong; Dongcai Zheng; Daoming Zheng; Xin Li; Yingmei Li; Shifu Chen; Xinhua Shu
Journal:  Front Oncol       Date:  2020-10-23       Impact factor: 6.244

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