Literature DB >> 30660612

The Limited Information Capacity of Cross-Reactive Sensors Drives the Evolutionary Expansion of Signaling.

Michał Komorowski1, Dan S Tawfik2.   

Abstract

Signaling systems expand by duplications of various components, be it receptors or downstream effectors. However, whether and how duplicated components contribute to higher signaling capacity is unclear, especially because in most cases, their specificities overlap. Using information theory, we found that augmentation of capacity by an increase in the copy number is strongly limited by logarithmic diminishing returns. Moreover, counter to conventional biochemical wisdom, refinements of the response mechanism, e.g., by cooperativity or allostery, do not increase the overall signaling capacity. However, signaling capacity nearly doubles when a promiscuous, non-cognate ligand becomes explicitly recognized via duplication and partial divergence of signaling components. Our findings suggest that expansion of signaling components via duplication and enlistment of promiscuously acting cues is virtually the only accessible evolutionary strategy to achieve overall high-signaling capacity despite overlapping specificities and molecular noise. This mode of expansion also explains the highly cross-wired architecture of signaling pathways.
Copyright © 2018 Elsevier Inc. All rights reserved.

Keywords:  allostery; biochemical signal processing; cooperativity; gene duplication; information capacity; paralog expansion

Mesh:

Year:  2019        PMID: 30660612     DOI: 10.1016/j.cels.2018.12.006

Source DB:  PubMed          Journal:  Cell Syst        ISSN: 2405-4712            Impact factor:   10.304


  6 in total

1.  Temporal signaling, population control, and information processing through chromatin-mediated gene regulation.

Authors:  Adi Mukund; Lacramioara Bintu
Journal:  J Theor Biol       Date:  2021-12-14       Impact factor: 2.691

Review 2.  Quantifying information of intracellular signaling: progress with machine learning.

Authors:  Ying Tang; Alexander Hoffmann
Journal:  Rep Prog Phys       Date:  2022-07-12

3.  Information-theoretic analysis of multivariate single-cell signaling responses.

Authors:  Tomasz Jetka; Karol Nienałtowski; Tomasz Winarski; Sławomir Błoński; Michał Komorowski
Journal:  PLoS Comput Biol       Date:  2019-07-12       Impact factor: 4.475

4.  Quantifying information accumulation encoded in the dynamics of biochemical signaling.

Authors:  Ying Tang; Adewunmi Adelaja; Felix X-F Ye; Eric Deeds; Roy Wollman; Alexander Hoffmann
Journal:  Nat Commun       Date:  2021-02-24       Impact factor: 14.919

5.  Modeling cell-specific dynamics and regulation of the common gamma chain cytokines.

Authors:  Ali M Farhat; Adam C Weiner; Cori Posner; Zoe S Kim; Brian Orcutt-Jahns; Scott M Carlson; Aaron S Meyer
Journal:  Cell Rep       Date:  2021-04-27       Impact factor: 9.423

6.  Fractional response analysis reveals logarithmic cytokine responses in cellular populations.

Authors:  Karol Nienałtowski; Rachel E Rigby; Jarosław Walczak; Karolina E Zakrzewska; Edyta Głów; Jan Rehwinkel; Michał Komorowski
Journal:  Nat Commun       Date:  2021-07-07       Impact factor: 14.919

  6 in total

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