Literature DB >> 30649226

Clonal haematopoiesis: a source of biological noise in cell-free DNA analyses.

C Abbosh1, C Swanton2, N J Birkbak3.   

Abstract

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Year:  2019        PMID: 30649226      PMCID: PMC6442654          DOI: 10.1093/annonc/mdy552

Source DB:  PubMed          Journal:  Ann Oncol        ISSN: 0923-7534            Impact factor:   32.976


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  11 in total

1.  Clonal hematopoiesis of indeterminate potential and its distinction from myelodysplastic syndromes.

Authors:  David P Steensma; Rafael Bejar; Siddhartha Jaiswal; R Coleman Lindsley; Mikkael A Sekeres; Robert P Hasserjian; Benjamin L Ebert
Journal:  Blood       Date:  2015-04-30       Impact factor: 22.113

2.  Next-Generation Sequencing of Circulating Tumor DNA for Early Cancer Detection.

Authors:  Alexander M Aravanis; Mark Lee; Richard D Klausner
Journal:  Cell       Date:  2017-02-09       Impact factor: 41.582

3.  False-Positive Plasma Genotyping Due to Clonal Hematopoiesis.

Authors:  Yuebi Hu; Bryan C Ulrich; Julianna Supplee; Yanan Kuang; Patrick H Lizotte; Nora B Feeney; Nicolas M Guibert; Mark M Awad; Kwok-Kin Wong; Pasi A Jänne; Cloud P Paweletz; Geoffrey R Oxnard
Journal:  Clin Cancer Res       Date:  2018-03-22       Impact factor: 12.531

4.  Predominant hematopoietic origin of cell-free DNA in plasma and serum after sex-mismatched bone marrow transplantation.

Authors:  Yanni Y N Lui; Ki-Wai Chik; Rossa W K Chiu; Cheong-Yip Ho; Christopher W K Lam; Y M Dennis Lo
Journal:  Clin Chem       Date:  2002-03       Impact factor: 8.327

5.  Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-Origin.

Authors:  Matthew W Snyder; Martin Kircher; Andrew J Hill; Riza M Daza; Jay Shendure
Journal:  Cell       Date:  2016-01-14       Impact factor: 41.582

6.  Age-related mutations associated with clonal hematopoietic expansion and malignancies.

Authors:  Mingchao Xie; Charles Lu; Jiayin Wang; Michael D McLellan; Kimberly J Johnson; Michael C Wendl; Joshua F McMichael; Heather K Schmidt; Venkata Yellapantula; Christopher A Miller; Bradley A Ozenberger; John S Welch; Daniel C Link; Matthew J Walter; Elaine R Mardis; John F Dipersio; Feng Chen; Richard K Wilson; Timothy J Ley; Li Ding
Journal:  Nat Med       Date:  2014-10-19       Impact factor: 53.440

7.  Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution.

Authors:  Christopher Abbosh; Nicolai J Birkbak; Gareth A Wilson; Mariam Jamal-Hanjani; Tudor Constantin; Raheleh Salari; John Le Quesne; David A Moore; Selvaraju Veeriah; Rachel Rosenthal; Teresa Marafioti; Eser Kirkizlar; Thomas B K Watkins; Nicholas McGranahan; Sophia Ward; Luke Martinson; Joan Riley; Francesco Fraioli; Maise Al Bakir; Eva Grönroos; Francisco Zambrana; Raymondo Endozo; Wenya Linda Bi; Fiona M Fennessy; Nicole Sponer; Diana Johnson; Joanne Laycock; Seema Shafi; Justyna Czyzewska-Khan; Andrew Rowan; Tim Chambers; Nik Matthews; Samra Turajlic; Crispin Hiley; Siow Ming Lee; Martin D Forster; Tanya Ahmad; Mary Falzon; Elaine Borg; David Lawrence; Martin Hayward; Shyam Kolvekar; Nikolaos Panagiotopoulos; Sam M Janes; Ricky Thakrar; Asia Ahmed; Fiona Blackhall; Yvonne Summers; Dina Hafez; Ashwini Naik; Apratim Ganguly; Stephanie Kareht; Rajesh Shah; Leena Joseph; Anne Marie Quinn; Phil A Crosbie; Babu Naidu; Gary Middleton; Gerald Langman; Simon Trotter; Marianne Nicolson; Hardy Remmen; Keith Kerr; Mahendran Chetty; Lesley Gomersall; Dean A Fennell; Apostolos Nakas; Sridhar Rathinam; Girija Anand; Sajid Khan; Peter Russell; Veni Ezhil; Babikir Ismail; Melanie Irvin-Sellers; Vineet Prakash; Jason F Lester; Malgorzata Kornaszewska; Richard Attanoos; Haydn Adams; Helen Davies; Dahmane Oukrif; Ayse U Akarca; John A Hartley; Helen L Lowe; Sara Lock; Natasha Iles; Harriet Bell; Yenting Ngai; Greg Elgar; Zoltan Szallasi; Roland F Schwarz; Javier Herrero; Aengus Stewart; Sergio A Quezada; Karl S Peggs; Peter Van Loo; Caroline Dive; C Jimmy Lin; Matthew Rabinowitz; Hugo J W L Aerts; Allan Hackshaw; Jacqui A Shaw; Bernhard G Zimmermann; Charles Swanton
Journal:  Nature       Date:  2017-04-26       Impact factor: 49.962

8.  Comprehensive human cell-type methylation atlas reveals origins of circulating cell-free DNA in health and disease.

Authors:  Joshua Moss; Judith Magenheim; Daniel Neiman; Hai Zemmour; Netanel Loyfer; Amit Korach; Yaacov Samet; Myriam Maoz; Henrik Druid; Peter Arner; Keng-Yeh Fu; Endre Kiss; Kirsty L Spalding; Giora Landesberg; Aviad Zick; Albert Grinshpun; A M James Shapiro; Markus Grompe; Avigail Dreazan Wittenberg; Benjamin Glaser; Ruth Shemer; Tommy Kaplan; Yuval Dor
Journal:  Nat Commun       Date:  2018-11-29       Impact factor: 14.919

9.  Detection and localization of surgically resectable cancers with a multi-analyte blood test.

Authors:  Joshua D Cohen; Lu Li; Yuxuan Wang; Christopher Thoburn; Bahman Afsari; Ludmila Danilova; Christopher Douville; Ammar A Javed; Fay Wong; Austin Mattox; Ralph H Hruban; Christopher L Wolfgang; Michael G Goggins; Marco Dal Molin; Tian-Li Wang; Richard Roden; Alison P Klein; Janine Ptak; Lisa Dobbyn; Joy Schaefer; Natalie Silliman; Maria Popoli; Joshua T Vogelstein; James D Browne; Robert E Schoen; Randall E Brand; Jeanne Tie; Peter Gibbs; Hui-Li Wong; Aaron S Mansfield; Jin Jen; Samir M Hanash; Massimo Falconi; Peter J Allen; Shibin Zhou; Chetan Bettegowda; Luis A Diaz; Cristian Tomasetti; Kenneth W Kinzler; Bert Vogelstein; Anne Marie Lennon; Nickolas Papadopoulos
Journal:  Science       Date:  2018-01-18       Impact factor: 47.728

10.  Integrated digital error suppression for improved detection of circulating tumor DNA.

Authors:  Aaron M Newman; Alexander F Lovejoy; Daniel M Klass; David M Kurtz; Jacob J Chabon; Florian Scherer; Henning Stehr; Chih Long Liu; Scott V Bratman; Carmen Say; Li Zhou; Justin N Carter; Robert B West; George W Sledge; Joseph B Shrager; Billy W Loo; Joel W Neal; Heather A Wakelee; Maximilian Diehn; Ash A Alizadeh
Journal:  Nat Biotechnol       Date:  2016-03-28       Impact factor: 54.908

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  18 in total

Review 1.  Circulating tumor DNA and liquid biopsy in oncology.

Authors:  David W Cescon; Scott V Bratman; Steven M Chan; Lillian L Siu
Journal:  Nat Cancer       Date:  2020-03-20

2.  Sensitive screening of single nucleotide polymorphisms in cell free DNA for diagnosis of gestational tumours.

Authors:  Mark R Openshaw; Michael J Seckl; Geoffrey J Maher; Rosemary A Fisher; Baljeet Kaur; Xianne Aguiar; Preetha Aravind; Natashia Cedeno; James Clark; Debbie Damon; Ehsan Ghorani; Adam Januszewski; Foteini Kalofonou; Ravindhi Murphy; Rajat Roy; Naveed Sarwar
Journal:  NPJ Genom Med       Date:  2022-04-08       Impact factor: 8.617

3.  Screening of early-staged colorectal neoplasia by clonal hematopoiesis-based liquid biopsy and machine-learning.

Authors:  Yin-Chen Hsu; Sin-Ming Huang; Li-Chun Chang; Yan-Ming Chen; Ya-Hsuan Chang; Jing-Wei Lin; Chien-Chia Lin; Ching-Wen Chen; Hsuan-Yu Chen; Han-Mo Chiu; Sung-Liang Yu
Journal:  Am J Cancer Res       Date:  2022-03-15       Impact factor: 6.166

Review 4.  Circulating Tumor DNA-Based Genomic Profiling Assays in Adult Solid Tumors for Precision Oncology: Recent Advancements and Future Challenges.

Authors:  Hiu Ting Chan; Yoon Ming Chin; Siew-Kee Low
Journal:  Cancers (Basel)       Date:  2022-07-04       Impact factor: 6.575

Review 5.  The future of early cancer detection.

Authors:  Rebecca C Fitzgerald; Antonis C Antoniou; Ljiljana Fruk; Nitzan Rosenfeld
Journal:  Nat Med       Date:  2022-04-19       Impact factor: 87.241

6.  Minimal Residual Disease Detection using a Plasma-only Circulating Tumor DNA Assay in Patients with Colorectal Cancer.

Authors:  Aparna R Parikh; Emily E Van Seventer; Giulia Siravegna; Anna V Hartwig; Ariel Jaimovich; Yupeng He; Katie Kanter; Madeleine G Fish; Kathryn D Fosbenner; Benchun Miao; Susannah Phillips; John H Carmichael; Nihaarika Sharma; Joy Jarnagin; Islam Baiev; Yojan S Shah; Isobel J Fetter; Heather A Shahzade; Jill N Allen; Lawrence S Blaszkowsky; Jeffrey W Clark; Jon S Dubois; Joseph W Franses; Bruce J Giantonio; Lipika Goyal; Samuel J Klempner; Ryan D Nipp; Eric J Roeland; David P Ryan; Colin D Weekes; Jennifer Y Wo; Theodore S Hong; Liliana Bordeianou; Cristina R Ferrone; Motaz Qadan; Hiroko Kunitake; David Berger; Rocco Ricciardi; James C Cusack; Victoria M Raymond; AmirAli Talasaz; Genevieve M Boland; Ryan B Corcoran
Journal:  Clin Cancer Res       Date:  2021-04-29       Impact factor: 12.531

Review 7.  Commercial ctDNA Assays for Minimal Residual Disease Detection of Solid Tumors.

Authors:  Kevin Chen; Misty D Shields; Pradeep S Chauhan; Ricardo J Ramirez; Peter K Harris; Melissa A Reimers; Jose P Zevallos; Andrew A Davis; Bruna Pellini; Aadel A Chaudhuri
Journal:  Mol Diagn Ther       Date:  2021-11-01       Impact factor: 4.476

Review 8.  Real-Time Molecular Monitoring in Acute Myeloid Leukemia With Circulating Tumor DNA.

Authors:  Deepshi Thakral; Ritu Gupta; Ranjit Kumar Sahoo; Pramod Verma; Indresh Kumar; Sangeeta Vashishtha
Journal:  Front Cell Dev Biol       Date:  2020-12-11

9.  Cell-Free DNA Detection of Tumor Mutations in Heterogeneous, Localized Prostate Cancer Via Targeted, Multiregion Sequencing.

Authors:  Emmalyn Chen; Clinton L Cario; Lancelote Leong; Karen Lopez; César P Márquez; Patricia S Li; Erica Oropeza; Imelda Tenggara; Janet Cowan; Jeffry P Simko; Robin Kageyama; Daniel K Wells; June M Chan; Terence Friedlander; Rahul Aggarwal; Pamela L Paris; Felix Feng; Peter R Carroll; John S Witte
Journal:  JCO Precis Oncol       Date:  2021-04-27

10.  Sensitive detection of tumor mutations from blood and its application to immunotherapy prognosis.

Authors:  Shuo Li; Zorawar S Noor; Weihua Zeng; Mary L Stackpole; Xiaohui Ni; Yonggang Zhou; Zuyang Yuan; Wing Hung Wong; Vatche G Agopian; Steven M Dubinett; Frank Alber; Wenyuan Li; Edward B Garon; Xianghong Jasmine Zhou
Journal:  Nat Commun       Date:  2021-07-07       Impact factor: 14.919

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