Literature DB >> 30644820

Discovering and deciphering relationships across disparate data modalities.

Joshua T Vogelstein1,2, Eric W Bridgeford1, Qing Wang1, Carey E Priebe1, Mauro Maggioni1, Cencheng Shen3.   

Abstract

Understanding the relationships between different properties of data, such as whether a genome or connectome has information about disease status, is increasingly important. While existing approaches can test whether two properties are related, they may require unfeasibly large sample sizes and often are not interpretable. Our approach, 'Multiscale Graph Correlation' (MGC), is a dependence test that juxtaposes disparate data science techniques, including k-nearest neighbors, kernel methods, and multiscale analysis. Other methods may require double or triple the number of samples to achieve the same statistical power as MGC in a benchmark suite including high-dimensional and nonlinear relationships, with dimensionality ranging from 1 to 1000. Moreover, MGC uniquely characterizes the latent geometry underlying the relationship, while maintaining computational efficiency. In real data, including brain imaging and cancer genetics, MGC detects the presence of a dependency and provides guidance for the next experiments to conduct.
© 2019, Vogelstein et al.

Entities:  

Keywords:  computational biology; data science; human; machine learning; neuroscience; statistics; systems biology

Year:  2019        PMID: 30644820      PMCID: PMC6386524          DOI: 10.7554/eLife.41690

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  32 in total

1.  A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays.

Authors: 
Journal:  J Biomol Screen       Date:  1999

2.  The Big Five default brain: functional evidence.

Authors:  Adriana Sampaio; José Miguel Soares; Joana Coutinho; Nuno Sousa; Óscar F Gonçalves
Journal:  Brain Struct Funct       Date:  2013-07-24       Impact factor: 3.270

3.  Adaptive manifold learning.

Authors:  Zhenyue Zhang; Jing Wang; Hongyuan Zha
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2012-02       Impact factor: 6.226

4.  The proof and measurement of association between two things. By C. Spearman, 1904.

Authors:  C Spearman
Journal:  Am J Psychol       Date:  1987 Fall-Winter

5.  The detection of disease clustering and a generalized regression approach.

Authors:  N Mantel
Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

6.  Serum neurogranin measurement as a biomarker of acute traumatic brain injury.

Authors:  Jun Yang; Frederick K Korley; Min Dai; Allen D Everett
Journal:  Clin Biochem       Date:  2015-05-27       Impact factor: 3.281

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Authors:  Jiansong Xu; Marc N Potenza
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8.  Detecting novel associations in large data sets.

Authors:  David N Reshef; Yakir A Reshef; Hilary K Finucane; Sharon R Grossman; Gilean McVean; Peter J Turnbaugh; Eric S Lander; Michael Mitzenmacher; Pardis C Sabeti
Journal:  Science       Date:  2011-12-16       Impact factor: 47.728

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Authors:  Runze Li; Wei Zhong; Liping Zhu
Journal:  J Am Stat Assoc       Date:  2012-07-01       Impact factor: 5.033

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Authors:  Hui-Hua Lee; Chu-Ai Lim; Yew-Teik Cheong; Manjit Singh; Lay-Harn Gam
Journal:  Int J Biol Sci       Date:  2012-02-20       Impact factor: 6.580

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