| Literature DB >> 30643011 |
Min Zhang1, Ling-Long Peng2, Xue-Lei Ji2, Hai-Bing Yang3, Ri-Sheng Zha1, Guo-Ping Gui4.
Abstract
Studies investigating association between tumor necrosis factor (TNF) gene polymorphisms and silicosis susceptibility report conflicting results. The aim of this meta-analysis was to assess association between TNF gene polymorphisms and silicosis susceptibility. A systematic literature search was conducted to find relevant studies. Pooled odds ratios (ORs) with 95% confidence intervals (CIs) were used to estimate the strength of association. Finally, a total of 12 articles, involving 1990 silicosis patients and 1898 healthy controls were included in the meta-analysis. Overall, meta-analysis revealed a significant association between the TNF -308A allele and silicosis (OR = 1.348, 95%CI = 1.156-1.570, P<0.001). A significant association of AA+AG genotype of the TNF -308 A/G polymorphism with susceptibility to silicosis was also found (OR = 1.466, 95%CI = 1.226-1.753, P<0.001). After stratification by ethnicity, significant associations were detected under the genetic models (A allele and AA+AG genotype) for TNF -308A/G polymorphisms in the Asian population (P<0.05). Similarly, meta-analysis of the TNF -238A/G polymorphism revealed the same pattern as that shown by meta-analysis of TNF -308A/G. The meta-analysis suggests that the TNF -308A/G and -238A/G polymorphisms are associated with susceptibility to silicosis, especially in Asians.Entities:
Keywords: TNF; meta-analysis; silicosis; susceptibility
Mesh:
Substances:
Year: 2019 PMID: 30643011 PMCID: PMC6361771 DOI: 10.1042/BSR20181896
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Characteristics of the individual studies included in the meta-analysis
| First author, year | Population (ethnicity) | Case | Control | Genotyping methods | Association | NOS score | ||
|---|---|---|---|---|---|---|---|---|
| Yucesoy 2001 [ | American (C) | 325 | 164 | PCR-RFLP | TNF −308A/G | 0.003 | 8 | |
| TNF −238A/G | 0.127 | |||||||
| Crobett 2002 [ | South African (AF) | 121 | 120 | PCR-RFLP | TNF −308A/G | 0.054 | 8 | |
| TNF −238A/G | 0.152 | |||||||
| Li 2004 [ | Chinese (A) | 259 | 341 | PCR-RFLP | TNF −308A/G | 0.554 | 8 | |
| Wang 2005 [ | Chinese (A) | 96 | 116 | PCR-RFLP | TNF −308A/G | 0.161 | 7 | |
| TNF −238A/G | 0.888 | |||||||
| Qu 2007 [ | Chinese (A) | 184 | 111 | PCR-RFLP | TNF −308A/G | 0.105 | 8 | |
| Wang 2005 [ | Chinese (A) | 75 | 137 | PCR-RFLP | TNF −308A/G | 0.176 | 7 | |
| TNF −238A/G | 0.897 | |||||||
| Wu 2007 [ | Chinese (A) | 183 | 111 | PCR-RFLP | TNF −308A/G | 0.106 | 8 | |
| TNF −238A/G | 0.619 | |||||||
| Yu 2009 [ | Chinese (A) | 259 | 341 | PCR-RFLP | TNF −238A/G | 0.379 | 8 | |
| Rad 2012 [ | Iranian (C) | 45 | 45 | PCR | TNF −308A/G | 0.584 | 8 | |
| Wang 2012 [ | Chinese (A) | 68 | 68 | PCR-RFLP | TNF −308A/G | 0.945 | 8 | |
| TNF −238A/G | 0.951 | |||||||
| Kurniawidjaja 2014 [ | Indonesian (A) | 171 | 165 | PCR-RFLP | TNF −308A/G | 0.719 | 8 | |
| Mai 2014 [ | Chinese (A) | 64 | 44 | PCR-RFLP | TNF −308A/G | 0.450 | 8 | |
| TNF −238A/G | 0.877 | |||||||
C: Caucasian, A: Asian, AF: African.
Figure 1Flow diagram of the study selection process
Meta-analysis of TNF gene polymorphisms and silicosis
| Polymorphisms | Populations | Number of studies | Sample size | Test of association | Test of heterogeneity | Egger’s test ( | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | OR (95%CI) | Model | |||||||||
| TNF −308A/G | Overall | 11 | 1591 | 1422 | 1.348 (1.156–1.570) | 3.82 | 0.000 | F | 11.59 | 0.314 | 13.7% | 0.016 |
| A vs. G | NA | NA | NA | 1.158 (1.012–1.325) | NA | NA | NA | NA | NA | NA | NA | |
| Asian | 8 | 1100 | 1093 | 1.581 (1.288–1.941) | 4.83 | 0.000 | F | 5.33 | 0.619 | 0.0% | 0.079 | |
| Caucasian | 2 | 370 | 209 | 1.183 (0.897–1.559) | 1.19 | 0.234 | F | 0.10 | 0.757 | 0.0% | NA | |
| African | 1 | 121 | 120 | 0.923 (0.605–1.407) | 0.37 | 0.709 | NA | NA | NA | NA | NA | |
| AA vs. AG+GG | Overall | 11 | 1591 | 1422 | 1.194 (0.752–1.898) | 0.75 | 0.452 | F | 5.93 | 0.821 | 0.0% | 0.009 |
| NA | NA | NA | 0.811 (0.536–1.228) | NA | NA | NA | NA | NA | NA | NA | ||
| Asian | 8 | 1100 | 1093 | 1.689 (0.894–3.226) | 1.62 | 0.106 | F | 2.32 | 0.940 | 0.0% | 0.148 | |
| Caucasian | 2 | 370 | 209 | 1.024 (0.382–2.744) | 0.05 | 0.962 | F | 0.95 | 0.331 | 0.0% | NA | |
| African | 1 | 121 | 120 | 0.608 (0.228–1.627) | 0.99 | 0.322 | NA | NA | NA | NA | NA | |
| AA+AG vs. GG | Overall | 11 | 1591 | 1422 | 1.466 (1.226–1.753) | 4.19 | 0.000 | F | 8.31 | 0.598 | 0.0% | 0.086 |
| Asian | 8 | 1100 | 1093 | 1.640 (1.307–2.058) | 4.27 | 0.000 | F | 5.19 | 0.637 | 0.0% | 0.118 | |
| Caucasian | 2 | 370 | 209 | 1.318 (0.925–1.878) | 1.53 | 0.127 | F | 0.00 | 0.986 | 0.0% | NA | |
| African | 1 | 121 | 120 | 1.021 (0.609–1.712) | 0.08 | 0.936 | NA | NA | NA | NA | NA | |
| AA vs. GG | Overall | 11 | 1591 | 1422 | 1.321 (0.826–2.112) | 1.16 | 0.245 | F | 6.15 | 0.802 | 0.0% | 0.010 |
| NA | NA | NA | 1.209 (0.730–2.002) | NA | NA | NA | NA | NA | NA | NA | ||
| Asian | 8 | 1100 | 1093 | 1.899 (0.995–3.624) | 1.95 | 0.052 | F | 2.42 | 0.933 | 0.0% | 0.196 | |
| Caucasian | 2 | 370 | 209 | 1.146 (0.417–3.149) | 0.26 | 0.792 | F | 0.78 | 0.376 | 0.0% | NA | |
| African | 1 | 121 | 120 | 0.636 (0.234–1.733) | 0.88 | 0.376 | NA | NA | NA | NA | NA | |
| AG vs. GG | Overall | 11 | 1591 | 1422 | 1.472 (1.222–1.772) | 4.08 | 0.000 | F | 6.53 | 0.769 | 0.0% | 0.205 |
| Asian | 8 | 1100 | 1093 | 1.611 (1.272–2.040) | 3.96 | 0.000 | F | 4.79 | 0.686 | 0.0% | 0.235 | |
| Caucasian | 2 | 370 | 209 | 1.325 (0.925–1.900) | 1.53 | 0.125 | F | 0.05 | 0.830 | 0.0% | NA | |
| African | 1 | 121 | 120 | 1.139 (0.655–1.980) | 0.46 | 0.645 | NA | NA | NA | NA | NA | |
| TNF −238A/G | Overall | 8 | 1191 | 1101 | 2.092 (1.232–3.550) | 2.73 | 0.006 | R | 21.76 | 0.003 | 67.8% | 0.061 |
| A vs. G | Asian | 6 | 745 | 817 | 3.044 (1.234–7.510) | 2.42 | 0.016 | R | 20.70 | 0.001 | 75.8% | 0.052 |
| Caucasian | 1 | 325 | 164 | 1.353 (0.994–1.840) | 1.92 | 0.055 | NA | NA | NA | NA | NA | |
| African | 1 | 121 | 120 | 1.339 (0.554–3.239) | 0.65 | 0.517 | NA | NA | NA | NA | NA | |
| AA vs. AG+GG | Overall | 8 | 1191 | 1101 | 1.374 (0.562–3.362) | 0.70 | 0.486 | F | 1.90 | 0.755 | 0.0% | 0.018 |
| NA | NA | NA | 1.027 (0.440–2.402) | 0.57 | NA | NA | NA | NA | NA | NA | ||
| Asian | 6 | 745 | 817 | 3.934 (0.614–25.193) | 1.45 | 0.148 | F | 0.70 | 0.966 | 0.0% | 0.567 | |
| Caucasian | 1 | 325 | 164 | 0.886 (0.256–3.074) | 0.19 | 0.849 | NA | NA | NA | NA | NA | |
| African | 1 | 121 | 120 | 0.992 (0.137–7.156) | 0.01 | 0.993 | NA | NA | NA | NA | NA | |
| AA+AG vs. GG | Overall | 8 | 1191 | 1101 | 2.230 (1.297–3.836) | 2.90 | 0.004 | R | 19.22 | 0.006 | 64.9% | 0.091 |
| Asian | 6 | 745 | 817 | 3.063 (1.240–7.567) | 2.43 | 0.015 | R | 19.88 | 0.001 | 74.8% | 0.051 | |
| Caucasian | 1 | 325 | 164 | 1.631 (1.112–2.392) | 2.50 | 0.012 | NA | NA | NA | NA | NA | |
| African | 1 | 121 | 120 | 1.454 (0.535–3.956) | 0.73 | 0.463 | NA | NA | NA | NA | NA | |
| AA vs. GG | Overall | 8 | 1191 | 1101 | 1.635 (0.666–4.016) | 1.07 | 0.283 | F | 1.80 | 0.772 | 0.0% | 0.044 |
| NA | NA | NA | 1.220 (0.549–2.708) | NA | NA | NA | NA | NA | NA | NA | ||
| Asian | 6 | 745 | 817 | 4.591 (0.716–29.452) | 1.61 | 0.108 | F | 0.07 | 0.965 | 0.0% | 0.682 | |
| Caucasian | 1 | 325 | 164 | 1.145 (0.325–4.027) | 0.21 | 0.833 | NA | NA | NA | NA | NA | |
| African | 1 | 121 | 120 | 1.018 (0.141–7.354) | 0.02 | 0.986 | NA | NA | NA | NA | NA | |
| AG vs. GG | Overall | 8 | 1191 | 1101 | 2.205 (1.299–3.743) | 2.93 | 0.003 | R | 18.18 | 0.011 | 61.5% | 0.093 |
| Asian | 6 | 745 | 817 | 2.919 (1.222–6.976) | 2.41 | 0.016 | R | 18.29 | 0.003 | 72.7% | 0.052 | |
| Caucasian | 1 | 325 | 164 | 1.659 (1.125–2.446) | 2.56 | 0.011 | NA | NA | NA | NA | NA | |
| African | 1 | 121 | 120 | 1.629 (0.517–5.132) | 0.83 | 0.405 | NA | NA | NA | NA | NA | |
F: fixed effects model, R: random effects model, NA: not available.
Adjusted using the “trim and fill” method.
Figure 2Odds ratios and 95% confidence intervals for individual studies and pooled data for the association between the A vs. G allele of TNF −308A/G polymorphism and silicosis
Figure 3Odds ratios and 95% confidence intervals for individual studies and pooled data for the association between the A vs. G allele of TNF −238A/G polymorphism and silicosis