Sarath P Gunasekera1, Julie L Meyer2, Yousong Ding3, Khalil A Abboud4, Danmeng Luo3, Justin E Campbell1, Alexander Angerhofer4, Justin L Goodsell4, Laurie J Raymundo5, Junyang Liu6, Tao Ye6, Hendrik Luesch3, Max Teplitski1,2, Valerie J Paul1. 1. Smithsonian Marine Station , Ft. Pierce , Florida 34949 , United States. 2. Soil and Water Sciences Department , University of Florida-Institute of Food and Agricultural Sciences , Gainesville , Florida 32611 , United States. 3. Department of Medicinal Chemistry and Center for Natural Products, Drug Discovery and Development , University of Florida , Gainesville , Florida 32610 , United States. 4. Department of Chemistry , University of Florida , Gainesville , Florida 32611 , United States. 5. University of Guam Marine Laboratory , Mangilao , GU 96923 , United States. 6. State Key Laboratory of Chemical Oncogenomics, School of Chemical Biology and Biotechnology , Peking University Shenzhen Graduate School , Xili, Nanshan District, Shenzhen , 518055 , People's Republic of China.
Abstract
Black band disease (BBD), a lethal, polymicrobial disease consortium dominated by the cyanobacterium Roseofilum reptotaenium, kills many species of corals worldwide. To uncover chemical signals or cytotoxins that could be important in proliferation of Roseofilum and the BBD layer, we examined the secondary metabolites present in geographically diverse collections of BBD from Caribbean and Pacific coral reefs. Looekeyolide A (1), a 20-membered macrocyclic compound formed by a 16-carbon polyketide chain, 2-deamino-2-hydroxymethionine, and d-leucine, and its autoxidation product looekeyolide B (2) were extracted as major compounds (∼1 mg g-1 dry wt) from more than a dozen field-collected BBD samples. Looekeyolides A and B were also produced by a nonaxenic R. reptotaenium culture under laboratory conditions at similar concentrations. R. reptotaenium genomes that were constructed from four different metagenomic data sets contained a unique nonribosomal peptide/polyketide biosynthetic cluster that is likely responsible for the biosynthesis of the looekeyolides. Looekeyolide A, which readily oxidizes to looekeyolide B, may play a biological role in reducing H2O2 and other reactive oxygen species that could occur in the BBD layer as it overgrows and destroys coral tissue.
Black band disease (BBD), a lethal, polymicrobial disease consortium dominated by the cyanobacterium Roseofilum reptotaenium, kills many species of corals worldwide. To uncover chemical signals or cytotoxins that could be important in proliferation of Roseofilum and the BBD layer, we examined the secondary metabolites present in geographically diverse collections of BBD from Caribbean and Pacific coral reefs. Looekeyolide A (1), a 20-membered macrocyclic compound formed by a 16-carbon polyketide chain, 2-deamino-2-hydroxymethionine, and d-leucine, and its autoxidation product looekeyolide B (2) were extracted as major compounds (∼1 mg g-1 dry wt) from more than a dozen field-collected BBD samples. Looekeyolides A and B were also produced by a nonaxenic R. reptotaenium culture under laboratory conditions at similar concentrations. R. reptotaenium genomes that were constructed from four different metagenomic data sets contained a unique nonribosomal peptide/polyketide biosynthetic cluster that is likely responsible for the biosynthesis of the looekeyolides. Looekeyolide A, which readily oxidizes to looekeyolide B, may play a biological role in reducing H2O2 and other reactive oxygen species that could occur in the BBD layer as it overgrows and destroys coral tissue.
Black band
disease (BBD) is
a globally distributed coral disease that kills many species of corals,
especially large, reef-building scleractinians, and it has been observed
on coral reefs since at least the 1970s.[1−5] BBD is easily recognized by the appearance of a dense dark purple
or black band, which is the visible accumulation of phycoerythrin-rich
filamentous cyanobacteria separating live coral tissue from recently
killed white coral skeleton (Figure ).[5−7]Roseofilum reptotaenium is the dominant
cyanobacterium within the BBD disease consortium.[6] Strains of Roseofilum have been cultivated
in the laboratory, but like many other filamentous cyanobacteria, Roseofilum cannot be fully isolated, only grown in nonaxenic,
unicyanobacterial cultures.[6] Recent work
discovered that Roseofilum is an uncommon, but widespread
member of healthy coral microbiomes, implying that growth of Roseofilum is constrained in healthy tissue until undefined
environmental or host-derived restrictions are removed.[8] When conditions are favorable for the growth
of Roseofilum, it creates a migrating band, which
dramatically alters microbial community structure[8] and kills host tissue underneath the band.[1−5]
Figure 1
Photographs
of the black band disease (BBD) affecting different
coral species. (a) BBD on Montastraea cavernosa in
the Florida Keys. (b) BBD on Orbicella faveolata in
the Florida Keys. (c) Collecting BBD from M. cavernosa in 60 mL syringes at Looe Key Reef, Florida Keys.
Photographs
of the black band disease (BBD) affecting different
coral species. (a) BBD on Montastraea cavernosa in
the Florida Keys. (b) BBD on Orbicella faveolata in
the Florida Keys. (c) Collecting BBD from M. cavernosa in 60 mL syringes at Looe Key Reef, Florida Keys.To better understand the mechanisms through which R. reptotaenium proliferates and creates a new environment
on the surface of corals
during BBD, we examined the major secondary metabolites present in
the black band layer in situ in geographically diverse
collections, with a particular focus on their possible natural functions
in the proliferation of the disease. We previously reported the presence
of lyngbic acid[9] as a major metabolite
in collections of BBD and showed that it inhibited quorum sensing
among Vibrio bacteria present in corals.[8] Herein, we describe the looekeyolides A (1) and B (2) isolated from the lipophilic extracts
of BBD, characterize their unique structures and the biosynthetic
gene cluster putatively responsible for their biosynthesis, and shed
light on natural functions of these compounds. Looekeyolides A and
B are named after the primary collection site of BBD for this study,
Looe Key reef in the Florida Keys, although they occurred in all samples
of BBD examined. The redox-sensitivity of looekeyolide A provides
insights into how BBD layers can overgrow live coral tissue and overcome
the production of reactive oxygen species by the coral holobiont.
Results and Discussion
Characterization of the Major Secondary Metabolites
in BBD
To uncover the secondary metabolites that are biologically
important
and dominant in BBD, we took a two-pronged approach: isolating and
characterizing the dominant products in the black band layer and the R. reptotaenium culture and identifying the biosynthetic
cluster predicted to produce these metabolites. Low-resolution LCMS
indicated two dominant peaks in all extracts of field-collected BBD
and in the Roseofilum culture (Figure ). Two macrocyclic metabolites, looekeyolide
A (1) and its oxidized product, looekeyolide B (2), were identified from the lipophilic extracts of 13 Caribbean
and Pacific BBD samples, cultured R. reptotaenium, and in re-collections from Florida and Belize locations. Looekeyolide
B ([M + Na]+ = m/z 702)
was observed at a retention time of ∼8.7 min and looekeyolide
A ([M + Na]+ = m/z 686)
at ∼11.6 min in the LCMS data (Figure ).
Figure 2
LCMS analysis of BBD
collections. Low-resolution LCMS data showing
two prominent peaks (looekeyolide B at ∼8.6–8.7 min
and looekeyolide A at ∼11.5–11.6 min.) in extracts of
field-collected BBD and cultured Roseofilum reptotaenium: (1) Montastraea cavernosa, Belize, (2–5) M. cavernosa, Florida, (6) Goniopora fruticosa, Guam, (7) Pseudodiploria strigosa, Belize, (8,
9) P. strigosa, Honduras, (10) P. clivosa, Belize, (11) P. strigosa, Honduras, (12) O. annularis, Belize, (13) O. faveolata, Belize, (14) Roseofilum reptotaenium culture.
LCMS analysis of BBD
collections. Low-resolution LCMS data showing
two prominent peaks (looekeyolide B at ∼8.6–8.7 min
and looekeyolide A at ∼11.5–11.6 min.) in extracts of
field-collected BBD and cultured Roseofilum reptotaenium: (1) Montastraea cavernosa, Belize, (2–5) M. cavernosa, Florida, (6) Goniopora fruticosa, Guam, (7) Pseudodiploria strigosa, Belize, (8,
9) P. strigosa, Honduras, (10) P. clivosa, Belize, (11) P. strigosa, Honduras, (12) O. annularis, Belize, (13) O. faveolata, Belize, (14) Roseofilum reptotaenium culture.Looekeyolide B (2), the more stable of the two compounds,
was obtained as a white, amorphous powder. HRESI/APCIMS supported
the molecular formula of C32H57NO12S. The IR spectrum displayed absorption bands at 1736 and 1679 cm–1, indicating the presence of ester and amide functionalities.
A strong broad absorption band at 3400 cm–1 suggested
the presence of several hydroxy groups in the molecule. The 1H and 13C NMR data were indicative of one α-amino
acid, one α-hydroxy acid, and one highly substituted 16-carbon
PK chain in the molecule (Table ).
Table 1
NMR Spectroscopic Data for Looekeyolide
B (2) in CD3CN (1H 600 MHz, 13C 151 MHz)
position
δC mult.
δH (J in Hz)
COSYa
HMBCb
NOESY
1
173.0, C
2a, 2b, 3, 29
2a
33.4, CH2
2.44, d
(−12.0)
2b, 3
3, 4
5, 2b
2b
2.38,
dd (−12.0, 9.6)
2a, 3
2a
3
77.0, CH
4.24, dd (9.6, 4.2)
2a, 2b, 4
2a, 2b, 4, 18
4, 11, 17
4
38.3, CH
2.11, m
3, 5, 18
5, 6a, 6b
3, 17, 18
5
70.1, CH
3.58, ddd (10.8,
10.8, 1.8)
4, 6a, 6b
4, 6, 18
2a, 6a, 18
6a
31.2, CH2
2.06, m
5, 6b, 7
5, 6b, 7, 19
6b
1.28, m
5, 6a, 7
6a
7
79.5, CH
3.35, dd (11.4, 3.3)
6a, 6b
5, 6a, 6b, 20
6a, 20
8
74.0, C
6a, 6b, 8-OH 9-OH, 20
8-OH
2.36, s
9
101.8,
C
8-OH, 9-OH 11, 20
9-OH
6.16, s
11-OH, 10a, 20
10a
37.0, CH2
1.85, dd (−14.4, 12.0)
10b, 11
9-OH, 11-H 11-OH, 12-H
10b, 20, 21
10b
1.57, d (−14.4)
10a, 11
10a
11
66.4, CH
4.62, d (11.4)
10a, 10b
10a, 11-OH 13, 21
3, 11-OH,
12 10a, 14a
11-OH
3.76, brs
9-OH, 21
12
42.2, CH
1.47, m
13, 21
10a, 10b, 13, 21
13, 21
13
80.3, CH
4.90, m
12, 14a, 14b
11, 21
12, 21
14a
34.8, CH2
2.06, m
13,14b, 15a, 15b
13, 16
14b
14b
1.49, m
13, 14a, 15a, 15b
14a
15a
19.9, CH2
1.25, m
14a, 14b, 15b, 16
13, 16
15b, 16
15b
1.17, m
14a, 14b, 15a, 16
15a, 16
16
14.3, CH3
0.89, t (7.2)
15a,
15b
14a, 14b
17
57.2, OCH3
3.27, s
3
3, 4
18
9.8, CH3
0.80, d (6.8)
4
3, 4, 5
4, 5
19
57.5, OCH3
3.35,
s
7
6
20
20.3, CH3
1.19, s
7, 8-OH
7, 10a
21
11.9, CH3
0.91, d
(6.6)
12
11, 12, 13
13,
10a, 11-OH
22
171.9, C
13, 23
23
50.3, CH
4.50, m
23-NH, 24a, 24b
23-NH, 24a, 24b
24a, 26
23-NH
7.36, d (9.0)
23
29
7.24, d (9.0)
23
24a
38.3, CH2
1.70, m
23,
24b, 25
23, 26, 27
23, 24b
24b
1.59, m
23, 24a, 25
24a
25
25.4, CH
1.66, m
24a,
24b, 26, 27
24a, 24b, 26, 27
26, 27
26
21.1, CH3
0.83, d (6.6)
25
24a, 24b, 27
23, 25
27
23.4, CH3
0.93, d (6.6)
25
24a, 24b, 26
25
28
172.6, 172.5, C
23-NH, 30
29
73.9, 73.4, CH
4.91, m
30
31a, 31b
30
30
26.0, 25.6, CH2
2.15, m
29,
31a, 31b
29, 31a, 31b
29
31a
50.3, 50.0, CH2
2.85, m
30, 31b
29, 32
31b
31b
2.71,
m
30, 31a
31a
32
39.0, 38.9,
CH3
2.521, s
31a, 31b
2.520, s
COSY and NOESY correlations are
from proton(s) stated to the indicated protons.
HMBC correlations are from proton(s)
stated to the indicated carbons.
COSY and NOESY correlations are
from proton(s) stated to the indicated protons.HMBC correlations are from proton(s)
stated to the indicated carbons.Interpretation of DQF COSY, edited HSQC, and HMBC data for C-22
to C-27 identified the amino acid as leucine (Supporting Information, pp S5–S10). The doubling of
the 13C signals from C-28 to C-32 and the doubling of 1H signals appeared as overlapping multiplets from H-29 to
H-31, and the split methyl signal H3-32 (δH 2.521, 2.520; δC 39.0, 38.9) together with the
presence of a sulfur atom in the molecular formula suggested the presence
of a hydroxymethionine sulfoxide residue in the molecule.[10] The COSY spectrum indicated coupling of hydroxymethine
H-29 (δH 4.91, δC 73.9/73.4) to
methylene protons H2-30 (δH 2.15, δC 26.0, 25.6) and then in turn to H2-31 (δH 2.85, 2.71, δC 50.3. 50.0). The HMBC spectrum
showed correlations of the methylene H2-31 to carbon signal
C-32 (δC 39.0/38.9) and of the methyl split singlet
−S-32-H3 (δH 2.521/2.520) in turn
to C-31 (δC 50.3, 50.0), thus confirming the presence
of a 2-deamino-2-hydroxymethionine sulfoxide [Met(O)] residue in the
molecule. Following the interpretation of DQF COSY, edited HSQC, and 13C experiments, the remaining 1H signals were assignable
to two partial structures (C-2 to C-7 and C-10 to C-16), two O-Me groups (H-17, δH 3.27, H-19, δH 3.35), three hydroxy groups (OH-8, δH 2.36;
OH-9, δH 6.16, OH-11, δH 3.76),
the remaining 13C signals to two nonprotonated carbons
(C-8, δC74.0; C-9, δC 101.8), and
one ester carbonyl group (C-1, δC 173.0) (Table ). HMBC correlations
from H-3 (δH 4.24) and H2-2 (δH 2.44 and 2.38) to C-1 (δC 173.0) connected
the remaining ester carbonyl. Similarly, the HMBC correlations from
H-17 (δH 3.27) to C-3 and H-19 (δH 3.35) to C-7 (δC 79.5) connected the two OMe groups to the C-3 and C-7 positions. HMBC correlations
connected the H3-18 methyl (δH 0.80) to
C-3 (δC 77.0) and C-5 (δC 70.1).
These data connected the methyl group, two methoxy groups, and the
carbonyl group to the C-2 to C-7 partial structure. HMBC correlations
indicated H3-20 to C-7 (δC 79.5) and C-8
(δC 74.0), OH-9 (δH 6.16) to C-8,
C-9, and C-10 (δC 37.0), and H2-6 (δH 2.08, 1.28) to C-5 and C-7. This information connected the
partial structure C-2 to C-7 to partial structure C-10 to C-16 and
thus established the planar structure for the substituted 16-carbon
polyketide chain moiety. Strong NOE correlations between the H-5 oxymethine
(δH 3.58) and the C-9 (δC 101.8)
anomeric OH (δH 6.16) group suggested the presence
of a pyrano ring system within the chain. An HMBC correlation from
the leucine NH to the C-28 carbonyl carbon of the hydroxymethione
connected the leucine to the hydroxymethione group. An HMBC correlation
between the H-13 of the C16 polyketide chain and the C-22
carbonyl of leucine connected these two residues by an ester linkage.
Similarly, the HMBC correlation between H-29 of the hydroxymethine
and the C-1 carbonyl of the PK chain connected these two residues
by an ester linkage. These data established the planar macrocyclic
structure for looekeyolide B (2).Looekeyolide
A (1) was obtained as a white solid (HRESI/APCIMS m/z 686.3528 [M + Na]+). HRESIMS
analysis indicated the difference of one oxygen atom in the molecular
formulas of 1 and 2. The 1H and 13C NMR spectral data of 1 were very similar to
those of 2 (Supporting Information pp S3, S4). The characteristic doubling of signals for the protons
and carbons in the vicinity of the hydroxy acid in 2 were
absent in the 1H and 13C NMR spectra of 1, indicating the absence of a sulfoxide group in 1. We noticed that looekeyolide A undergoes partial autoxidation to
looekeyolide B during the isolation and HPLC separation process. This
information together with the analysis of COSY, HSQC, and HMBC data
with the NMR data of 2 (Table ) confirmed the structure of looekeyolide
A (1) as S-deoxylooekeyolide B.The absolute configuration of the leucine residue was determined
by chiral-phase HPLC analysis, comparing the amino acid content in
the acid hydrolysate with standard d- and l-leucine.
Retention times established the d-configuration for leucine.
Looekeyolide B was subjected to desulfurization with Raney-Ni to give des-thiomethyllooekeyolide A (3). The desulfurization
converted the hydroxy Met(O) in looekeyolide B to 2-hydroxybutyric
acid. The acid hydrolysate of des-thiomethyllooekeyolide
A was used to determine the configuration of 2-hydroxybutyric acid,
which determined the absolute configuration of 2-deamino-2-hydroxymethionine
in looekeyolide A and 2-deamino-2-hydroxymethionine sulfoxide in looekeyolide
B. The retention time indicated the presence of (S)-2-hydroxybutyric acid.Compound 1 is likely
the natural product produced
by the cyanobacterium and was stable only under helium gas and in
the presence of trace fatty acid impurities. Looekeyolide B (2) is the autoxidized product and is stable under normal laboratory
conditions, and although it forms during extraction and purification,
it may also occur in the BBD layer through natural oxidation–reduction
processes. As the stable looekeyolide B (2) occurs as
a mixture of R and S sulfoxide diastereomers,
a semisynthetic desulfurized analogue, des-thiomethyllooekeyolide
A (3), was prepared and crystallized for configurational
analysis. A crystal of des-thiomethyllooekeyolide
A was used in X-ray crystallography studies to establish the relative
stereostructure of the highly substituted cyclized molecule. The crystal
structure has been deposited in the Cambridge Crystallographic Data
Centre (CCDC 1492584). Because the absolute configuration of leucine
and hydroxy acid units in the molecule was determined by chiral-phase
HPLC analysis, applying the absolute configurations of (S)-2-hydroxybutyric acid and d-leucine to the X-ray relative
stereostructure established the absolute configuration of all stereogenic
centers of des-thiomethyllooekeyolide A. This information
was extended to determine the absolute configuration of all stereogenic
centers of the related looekeyolides A and B.The structural
assignment of 3 was confirmed by total
chemical synthesis, which included a concise assembly of three building
blocks to afford a macrocyclic precursor and subsequent dual macrolactonization/pyran–hemiketal
formation (Figure ). As shown, des-thiomethyllooekeyolide A was obtained from the corresponding
linear seco acid precursor by a macrocyclization
reaction followed by removal of protecting groups. The linear seco acid precursor was assembled from a polypropionic acid
segment, an amino acid chloride, and a hydroxy acid. Details on the
synthesis of 3 will be reported elsewhere.
Figure 3
Synthesis scheme
for des-thiomethyllooekeyolide
A (3).
Synthesis scheme
for des-thiomethyllooekeyolide
A (3).
Biosynthesis of Looekeyolides
A and B
One well-conserved
nonribosomal peptide (NRP)/polyketide (PK) hybrid biosynthetic cluster,
hereafter referred to as the lkl gene cluster, was
detected in four Roseofilum metagenome-assembled
genomes (MAGs) previously analyzed and is predicted to produce looekeyolide
A (Figure a).[11] The lkl gene clusters are publicly
available in IMG[12] on scaffold IDs 2627864002,
2627864283, 2627863695, and 2627863888. In addition, the lkl gene cluster was detected on a contig (GenBank Accession MLAW01000030) in a Roseofilum MAG from an enrichment culture
of BBD isolated from Pavona duerdeni on the central
Great Barrier Reef.[13] The amino acid sequences
of lkl genes from the Caribbean Roseofilum MAGs and the Florida-based Roseofilum culture were
>99% identical. In contrast, lkl genes in the
Guam Roseofilum MAG ranged from 88% to 96% identity
with their
homologues from the Caribbean Roseofilum MAGs. The
core biosynthetic enzymes from the lkl cluster included
six PKSs (LklA-F), two NRPSs (LklG and LklI), and one tailoring enzyme
(LklH, 2-ketoglutarate-Fe(II) dependent dioxygenase) (Figure , Supporting
Information, pp S17, S18). The specificity of the AT and MT
domains and the stereochemistry of the KR domain were determined by
alignment to corresponding domains of characterized biosynthetic clusters
of cyanobacteria and others (Figure b–d). Specifically, all AT domains in Lkl PKSs
are predicted to be specific toward malonyl-CoA (Figure b), while MT domains from LklD
and LklF may promote O-methylation reactions, with
three others for C-methylation (Figure c). The Lkl PKSs encode six
KR domains, including the second KR domain in LklB predicted to be
inactive due to the mutations of two key catalytic residues (Figure d). Sequence alignment
analysis indicated that the KR domains from LklA, LklE, and LklF produce
a type B hydroxyl R stereocenter, while those from
the LklB first module and LklD might produce two S stereocenters with OH groups (type A). LklG (NRPS) also carries
one KR domain that presumably reduces one 2-keto acid substrate to
generate an OH group whose stereochemical configuration remains bioinformatically
undefinable. In line with the predicted function of LklG-KR, the substrate
of the LklG A domain is predicted to be a 2-keto acid and is assumed
to be 2-keto-4-(methylthio) butyrate in looekeyolide biosynthesis
(Figure a, Supporting Information p S18). Overall, bioinformatics
analysis of all four isolated lkl gene clusters indicated
that they are highly likely to be responsible for the biosynthesis
of looekeyolide A (1) (more details in Supporting Information pp S17, S18).
Figure 4
Looekeyolide biosynthetic
cluster in Roseofilum with proposed biosynthetic
pathway. (a) Proposed biosynthetic pathway
of looekeyolide A deduced from the identified lkl gene clusters present in four Roseofilum metagenome-assembled
genomes from Florida, Belize, and Guam. One loading module and one
PKS module (module 1) are missing from all isolated clusters. They
are proposed to synthesize a butyrate intermediate from one molecule
of acetyl-CoA and one molecule of malonyl-CoA. Alternatively, the
loading module may directly activate butyryl-CoA. Stereocenters are
labeled based on the prediction of the conserved motifs of KR domains.
The second AT domain in LklB is not fully elucidated in four metagenome-assembled
genomes. The second KR domain in LklB is predicted to be inactive.
The substrate of the LklG A domain is predicted to be a 2-ketoacid
and is assumed to be 2-keto-4-(methylthio) butyrate in looekeyolide
biosynthesis. (b) Sequence motifs of AT domains from Lkl PKSs, curacin
PKSs, cryptophycin PKSs, microcystin PKSs, niddamycin PKSs, and erythromycin
PKS. Sequence analysis predicted that all AT domains in Lkl PKSs use
malonyl-CoA as their substrates. AT domains from niddamycin PKSs and
erythromycin PKS activate methylmalonyl-CoA. (c) Sequence motifs of
MT domains from Lkl PKSs. Sequence analysis predicted that MT domains
from LklD and LklF catalyze O-methylation reactions,
while all others promote C-methylation reactions.
(d) Sequence motifs of KR domains from Lkl PKSs and NRPS. KR domains
from LklA, LklE, and LklF were predicted to produce a type B hydroxy
stereocenter (R-OH), while those from the LklB first
module and LklD might produce two S stereocenters
with OH groups (type A). The KR domain from LklG (NRPS) was predicted
to reduce the 2-keto acid substrate and might also generate an R-OH modification. The catalytic residues in these motifs
are labeled with asterisks. Two catalytic residues in LklB-KR2 are
mutated, making it inactive.
Looekeyolide biosynthetic
cluster in Roseofilum with proposed biosynthetic
pathway. (a) Proposed biosynthetic pathway
of looekeyolide A deduced from the identified lkl gene clusters present in four Roseofilum metagenome-assembled
genomes from Florida, Belize, and Guam. One loading module and one
PKS module (module 1) are missing from all isolated clusters. They
are proposed to synthesize a butyrate intermediate from one molecule
of acetyl-CoA and one molecule of malonyl-CoA. Alternatively, the
loading module may directly activate butyryl-CoA. Stereocenters are
labeled based on the prediction of the conserved motifs of KR domains.
The second AT domain in LklB is not fully elucidated in four metagenome-assembled
genomes. The second KR domain in LklB is predicted to be inactive.
The substrate of the LklG A domain is predicted to be a 2-ketoacid
and is assumed to be 2-keto-4-(methylthio) butyrate in looekeyolide
biosynthesis. (b) Sequence motifs of AT domains from Lkl PKSs, curacin
PKSs, cryptophycin PKSs, microcystin PKSs, niddamycin PKSs, and erythromycin
PKS. Sequence analysis predicted that all AT domains in Lkl PKSs use
malonyl-CoA as their substrates. AT domains from niddamycin PKSs and
erythromycin PKS activate methylmalonyl-CoA. (c) Sequence motifs of
MT domains from Lkl PKSs. Sequence analysis predicted that MT domains
from LklD and LklF catalyze O-methylation reactions,
while all others promote C-methylation reactions.
(d) Sequence motifs of KR domains from Lkl PKSs and NRPS. KR domains
from LklA, LklE, and LklF were predicted to produce a type B hydroxy
stereocenter (R-OH), while those from the LklB first
module and LklD might produce two S stereocenters
with OH groups (type A). The KR domain from LklG (NRPS) was predicted
to reduce the 2-keto acid substrate and might also generate an R-OH modification. The catalytic residues in these motifs
are labeled with asterisks. Two catalytic residues in LklB-KR2 are
mutated, making it inactive.
Natural Functions of Looekeyolides A (1) and B
(2)
Because H2O2 and other
reactive oxygen species would be released as the BBD layer overgrows
and destroys coral tissue, including associated endosymbiotic dinoflagellates
(Symbiodinium spp.) that appear to be the source
of H2O2,[14] we examined
the role that looekeyolide A might play in reducing H2O2 due to its redox-sensitive functionality. Because pure 1 is unstable under aerobic conditions, and we had noticed
that it was stabilized in the presence of lyngbic acid, we had to
test the mixture for insights into its bioactivity. Serial concentrations
of a looekeyolide mixture (1, 2, and lyngbic
acid, 1:1:1, estimated by NMR), 2 alone, and lyngbic
acid alone were incubated with 10 μM H2O2 at 37 °C in buffer. After 24 h of treatment, the H2O2 level was measured using a fluorimetric H2O2 assay kit. The H2O2 concentration
was reduced to nearly zero when incubating with a 1 mM looekeyolide
mixture, while largely unaffected with either 2 or lyngbic
acid alone, suggesting the ability of 1 to consume H2O2 (Figure a). High-performance liquid chromatography (HPLC) of the looekeyolide
mixture after incubating with or without H2O2 for 24 h was used to quantify changes in the levels of 1 and 2 (Figure b). After incubating with 1 mM H2O2,
the peak area of 1 significantly decreased to only 26%
of the controls, while the peak area of 2 increased to
122% of controls, indicating the conversion of 1 to 2 through reaction with H2O2 (Figure b,c).
Figure 5
Interactions of looekeyolides
with H2O2.
(a) Serial concentrations of a looekeyolide mixture (1–2–lyngbic acid, 1:1:1, estimated by NMR), 2, and lyngbic acid were incubated with 10 μM H2O2 at 37 °C for 24 h, and the H2O2 level was measured using the fluorimetric H2O2 assay kit. The H2O2 level was
significantly reduced when incubating with the looekeyolide mixture,
while not affected with either 2 or lyngbic acid, suggesting
the ability of 1 to consume H2O2. Data are presented as mean ± SD, ***P <
0.001, ****P < 0.0001 compared to solvent control
using ANOVA and Dunnett’s test (n = 2). (b)
HPLC traces of the looekeyolide mixture after incubating with or without
H2O2 at 37 °C for 24 h. Nocodazole was
used as the internal standard. (c) Fold change in HPLC peak area of 1 and 2 in each looekeyolide mixture when incubating
with or without H2O2 at 37 °C for 24 h.
By incubating with H2O2, the peak of 1 was significantly decreased, while the peak of 2 was
increased, indicating the conversion of 1 to 2 when reacting with H2O2. Data are presented
as mean ± SD; *P < 0.05, ****P < 0.0001 compared to solvent control using ANOVA and Dunnett’s
test (n = 3).
Interactions of looekeyolides
with H2O2.
(a) Serial concentrations of a looekeyolide mixture (1–2–lyngbic acid, 1:1:1, estimated by NMR), 2, and lyngbic acid were incubated with 10 μM H2O2 at 37 °C for 24 h, and the H2O2 level was measured using the fluorimetric H2O2 assay kit. The H2O2 level was
significantly reduced when incubating with the looekeyolide mixture,
while not affected with either 2 or lyngbic acid, suggesting
the ability of 1 to consume H2O2. Data are presented as mean ± SD, ***P <
0.001, ****P < 0.0001 compared to solvent control
using ANOVA and Dunnett’s test (n = 2). (b)
HPLC traces of the looekeyolide mixture after incubating with or without
H2O2 at 37 °C for 24 h. Nocodazole was
used as the internal standard. (c) Fold change in HPLC peak area of 1 and 2 in each looekeyolide mixture when incubating
with or without H2O2 at 37 °C for 24 h.
By incubating with H2O2, the peak of 1 was significantly decreased, while the peak of 2 was
increased, indicating the conversion of 1 to 2 when reacting with H2O2. Data are presented
as mean ± SD; *P < 0.05, ****P < 0.0001 compared to solvent control using ANOVA and Dunnett’s
test (n = 3).We also assessed the stable compound looekeyolide B (2) in a range of ecologically relevant bioassays. To determine
how
looekeyolides might affect coral-associated microbiota, we looked
for changes in the growth and biofilm formation of several coral-associated
bacterial isolates, but did not find any effects of 2 at the concentrations tested (Supporting Information pp S16, S17, S19). We tested whether 2 might function
as a siderophore, given its hydroxylated and highly substituted cyclized
structure and the high iron demands of marine cyanobacteria for iron-rich
enzymes required for both photosynthesis and nitrogen fixation, but
electron paramagnetic resonance spectroscopy demonstrated that 2 does not bind Fe(III) (Supporting Information pp S16, S18). Looekeyolide B alone and a sample of looekeyolide
A mixed with lyngbic acid (∼2:1 based on 1H NMR)
were embedded at natural concentrations in Phytagel strips in separate
experiments, applied to surfaces of the coral Montastraea
cavernosa along with control strips for 48 h, and assessed
for toxicity or inhibitory effects on photosynthetic performance using
pulse amplitude modulated (PAM) fluorometry, following previously
described methods.[15] No adverse effects
were observed on any corals tested (Supporting
Information, pp S16, S17, S19).Black band disease is
a serious threat to coral reefs and causes
mortality in dozens of coral species worldwide.[1−5] Overgrowth by BBD leading to coral mortality may
in part be mediated through secondary metabolites biosynthesized by
the filamentous cyanobacterium R. reptotaenium, including
the dominant natural product looekeyolide A (1). Looekeyolide
A, a novel 20-membered macrocyclic polyketide/peptide hybrid, was
detected in collections of more than a dozen BBD microbial consortia
from the Caribbean and the Pacific and is unusual compared to other
cyanobacterial secondary metabolites in containing a rare d-leucine, 2(S)-hydroxymethionine, and a C16-polyketide chain. Secondary metabolites may be key to understanding
interactions in the BBD microbial community, such as previously demonstrated
for the role of lyngbic acid in inhibiting QS in Vibrio species.[8] In addition to lyngbic acid, R. reptotaenium produces 1 as part of in situ BBD and in a laboratory culture. Other secondary
metabolites of cyanobacteria, the microcystins, have been previously
reported in BBD;[16,17] however, we did not detect microcystins
in any of our extracts of field-collected BBD or cultured Roseofilum, nor did we detect genes for the microcystins
in metagenomic data previously reported.[11] Additional antibiotic, terpene, NRPS, and PKS biosynthetic gene
clusters were found in metagenome-assembled genomes from BBD consortia,[11] suggesting other secondary metabolites remain
to be discovered in BBD.Looekeyolide A (1) autoxidizes
to looekeyolide B (2), making it particularly challenging
to assess the natural
functions of 1. Thus, we could test 2 directly
in various assays, but not the parent compound 1 by itself.
Looekeyolide B did not show any toxicity, nor did it display antibacterial
properties or function as a siderophore. Our data show that 1 may play a role in reducing H2O2 and
other reactive oxygen species that could occur in the BBD layer as
it overgrows and destroys coral tissue. H2O2 can transform into other labile reactive oxygen species and influence
larger-scale ecological processes, such as coral bleaching.[18,19] Various corals release H2O2 and antioxidants
to their external environment, which can influence the H2O2 dynamics of reefs.[20,21] Over 20 μmol
L–1 H2O2 has been detected
in the immediate coral diffusive boundary layer.[14,21] H2O2 release may aid corals in removing some
of the internal H2O2 produced by their endosymbiotic
algae and possibly have a defensive function. Looekeyolide A may allow Roseofilum to cope with this coral-produced source of H2O2, as it migrates across the coral colony.It is also possible that the looekeyolides function as feeding
deterrents that protect Roseofilum from consumption
by grazers, similarly to other natural products from benthic marine
cyanobacteria.[22−24] Given the limited amounts of these unique natural
products that can be obtained through collection or culture, having
a synthetic route to looekeyolides will facilitate the testing of
their role in chemical defense and the determination of other biological
functions for the looekeyolides.
Experimental
Section
General Experimental Procedures
The melting point measured
using a Gallenkamp melting point apparatus is uncorrected. The optical
rotations were recorded on a Jasco P2000 polarimeter. UV spectrophotometric
data were acquired on a Shimadzu PharmaSpec UV–visible spectrophotometer.
IR spectroscopic data were obtained on a Thermo Scientific iS5 FT-IR
spectrometer. NMR data were collected on a JEOL ECA-600 spectrometer
operating at 600.17 MHz for 1H and 150.9 MHz for 13C. 1H NMR chemical shifts (referenced to residual CHD2CN observed at δH 1.93 and residual CHD2OD at δH 3.30) were assigned using a combination
of data from 2D DQF COSY and multiplicity-edited HSQC experiments.
The edited-HSQC experiment was optimized for JCH = 140 Hz, and the HMBC experiment was optimized for 2/3JCH = 8 Hz. 13C NMR
chemical shifts (referenced to CD3CN observed at δC 118.2 and CD3OD at δC 49.0) were
assigned on the basis of multiplicity-edited HSQC experiments. The
LCMS data were obtained on an LC electrospray ionization MS system
with an LTQ Advantage Max spectrometer (Thermo Finnigan). The HRMS
data were obtained using an Agilent 6210 LC-TOF mass spectrometer
equipped with an APCI/ESI multimode ion source detector at the Mass
Spectrometer Facility at the University of California, Riverside,
California. Silica gel 60 (EMD Chemicals, Inc., 230–400 mesh)
and Varian BondElut octadecyl (C18) were used for column
chromatography. All solvents used were of HPLC grade (Fisher Scientific).
Study Species
Samples of the BBD layer were collected in situ by aspiration with sterile, needleless syringes
as previously described from the Florida Keys (Figure c), Belize, Honduras, and Guam.[8] A BBD layer of an infected Montastraea
cavernosa coral was collected at Looe Key Reef, Florida,
on April 23, 2014, and used to isolate a unicyanobacterial enrichment
culture of Roseofilum reptotaenium. This Roseofilum strain, isolated in unicyanobacterial, but not
axenic culture as previously described,[11] was grown in a medium containing 4 parts artificial seawater made
from 36 g/L Red Sea Coral Pro Salts or natural seawater and 1 part
Cyanobacterial BG-11 media (ATCC medium 616), at pH 7, room temperature,
with 12 h of light and dark per day. Cyanobacterial cultures were
confirmed as unicyanobacterial by amplifying extracted community DNA
with cyanobacterial-specific 16S rRNA primers[25] and directly sequencing the cleaned PCR product by Sanger sequencing
at the DNA Lab of Arizona State University (GenBank Accession No. KP689103). Full
metagenomic and microbiome data on the samples we examined chemically
have already been published.[11]
Biological
Material Collection, Extraction, and Compound Isolation
For
the chemical identification of major compounds present in
situ within BBD consortia, samples were collected by
aspiration of the entire BBD layer (mat) into 50–60 mL needleless
syringes. Once aspirated, mats self-aggregated rapidly, and excessive
seawater was removed. Within 1 h of collection, samples were frozen
at −20 °C and maintained frozen until the extraction as
detailed below. Freeze-dried BBD mats were extracted with organic
solvents (1:1 EtOAc–MeOH). Lipophilic extracts from all collected
samples were analyzed by LRESI-LC-MS to screen for their production
of secondary metabolites. Each sample (10 μL) was injected and
separated on a reversed-phase HPLC column (Grace; C18; 5 μm,
2.1 × 100 mm) with step gradient elution of 0.1% formic acid
in H2O (eluent A) and 100% CH3CN (eluent B).
The gradient program was as follows: 0–22 min, B, 20–100%;
flow rate, 700 μL·min–1. The column temperature
was kept at 30 °C. The MS spectra and retention time of each
peak were recorded using the positive and negative ion detection modes.The lipophilic extract was subsequently partitioned between EtOAc
and H2O. The EtOAc-soluble portion was fractionated by
reversed-phase C18 chromatography followed by reversed-phase C18 HPLC
to give the new compounds looekeyolides A and B, which had been observed
as major metabolites in the EtOAc partitions by LCMS and proton NMR
analyses. The relative yields of the two looekeyolides isolated from
different batches were highly dependent on the conditions used for
extraction and separation methods.The black band mat of Orbicella annularis and Pseudodiploria strigosa were collected in Belize (Smithsonian
Carrie Bow Cay Field Station) on March 1, 2013. These collections
were freeze-dried to give a dry weight of 7.9 and 3.04 g from Orbicella spp. and P. strigosa, respectively.
Each collection was extracted successively with 50 mL of EtOAc, MeOH,
and MeOH–H2O (1:1). The three extracts were combined
and concentrated by rotary evaporation at 45 °C under reduced
pressure. Each concentrated extract was separately partitioned between
EtOAc and H2O. The H2O-soluble fractions were
repartitioned between n-BuOH and H2O.
Concentration of these extracts furnished 0.063 g of EtOAc-soluble
fraction from the Orbicella collection and 0.041
g of EtOAc-soluble fraction from the Pseudodiploria collection. The 1H NMR spectra of these EtOAc-soluble
fractions from the two coral species indicated the presence of the
same set of major compounds, and therefore, these two extracts were
combined for further studies. The combined EtOAc extract (0.104 g)
was chromatographed on a column of C18 (10 g) using a MeOH–H2O step gradient system to give 11 subfractions. The subfraction
7 (0.004 g), eluted with MeOH–H2O (7:3), was further
separated by reversed-phase HPLC (semipreparative, 5 μm, RP-C18) using MeOH–H2O (7:3) to give 2.6 mg of
a new compound, looekeyolide B (2). Similarly, the HPLC
of subfraction 8 (0.003 g), eluted with MeOH–H2O
(8:2), furnished an additional 1.4 mg of 2 to give a
total yield of 4.0 mg (yield, 0.035% dry wt) from this collection.A second batch of the black band mat from Orbicella spp. and P. strigosa was collected in Belize (Carrie
Bow Cay Field Station) on July 13–17, 2013. The freeze-dried
material of 9.43 g was extracted with MeOH saturated with helium gas.
All subsequent partitioning and chromatography methods were performed
using helium gas saturated solvents. This MeOH extract (1.82 g) was
partitioned between EtOAc and H2O to give the EtOAc-soluble
fraction (0.237 g) and H2O-soluble fraction. The EtOAc
extract was chromatographed on a column of C18 (16 g) using
a MeOH–H2O step gradient system to give six subfractions.
Subfraction 3 (0.006 g), eluted with MeOH–H2O (7:3),
was further separated by reversed-phase HPLC using the same conditions
to give 2.6 mg of looekeyolide B (2). Low-resolution
ESI mass spectral analysis by direct injection method of 2 gave a mass peak at m/z of 702
for (M + Na)+. The subfraction 4 (0.023 g), eluted with
MeOH–H2O (8:2), was analyzed by 1H NMR
and LRESIMS by the direct injection method. The 1H NMR
spectrum of this subfraction 4 indicated the presence of a related
looekeyolide A (1) together with an unsaturated fatty
acid as an impurity. LRESIMS of this subfraction gave a mass peak
at m/z of 686 for (M + Na)+, indicating a difference of 16 mass units attributed to one less
oxygen atom in the related looekeyolide A (1). A portion
of this fraction (12 mg) on purification by HPLC using the same conditions
yielded 2 (3 mg), instead of the expected related looekeyolide
(1). The 1H NMR and LRMS data suggested that 1 is unstable under these conditions and easily oxidized to 2 during the HPLC separation. Another portion of subfraction
4 (0.004 g) on purification by HPLC using helium-degassed solvents
with minimum exposure to air furnished the naturally occurring compound
looekeyolide A (1, 0.0009 g), its oxidized product looekeyolide
B (2, 0.001 g), and a mixture of fatty acids (0.002 g).Three small batches of the black band mat were also collected from M. cavernosa in the Florida Keys. The first batch was collected
from Wonderland Reef in June 2013. Two more batches were collected
from Looe Key in June and November 2013. These batches were separately
subjected to purification using the methods described above. The Wonderland
Reef batch of dry weight of 0.034 g gave 0.1 mg of looekeyolide B
(2). Similarly, the Looe Key batches of dry weights of 1.055 and 1.585
g furnished 0.3 mg and 0.4 mg of 2, respectively.On November 20, 2013, another batch of the black band mat was collected
from Looe Key for studies. This batch of dry weight 1.109 g furnished
0.3 mg of looekeyolide B (2). Similarly, another batch
was collected from Looe Key in April 2014. This batch of dry weight
3.672 g yielded 4.7 mg of looekeyolide A, 2.1 mg of looekeyolide B,
and 5.2 mg of fatty acid. HRMS data [HRESI/APCIMS m/z 257.2127 [M + H]+ (calcd for C15H29O3, 257.2117)] identified this fatty
acid as lyngbic acid. The structure of lyngbic acid was confirmed
by comparing the 1H NMR and 13C NMR data of
an authentic sample of lyngbic acid. This lyngbic acid gave a specific
rotation value of [α]25D −12.0
(c 0.06, CHCl3), similar to the specific
rotation value of lyngbic acid reported from other marine cyanobacteria.[9] Subsequently, we noticed that looekeyolide A
is more stable in the presence of lyngbic acid.
Looekeyolide B (2, 4.5
mg) was dissolved in EtOH (0.5 mL) and treated with an excess of fresh
Raney-Ni (2400) as a slurry in H2O (0.1 mL) and refluxed
for 0.5 h. The product was filtered and concentrated to give a white
solid. This solid was further purified by reversed-phase HPLC (semipreparative,
5 μm, RP-C18) using MeOH–H2O (8.5–1.5)
to give 3.7 mg of the desulfurized compound des-thiomethylooekeyolide
A (3). This material on crystallization in a mixture
of benzene and hexanes (1:95) yielded colorless crystals of des-thiomethylooekeyolide A (3). A selected
crystal from this batch was used in X-ray crystallography studies.
des-Thiomethylooekeyolide A (3, 0.2 mg) was suspended in
6 N HCl (0.3 mL) and heated at 115 °C for 18 h in a sealed tube.
The hydrolysate was concentrated to dryness. The residue was reconstituted
in 0.2 mL of H2O and analyzed by chiral HPLC, comparing
the retention times with those of authentic standards [Phenomenex
Chirex (D) Penicillamine, 4.6 × 250 mm, 5 μm]; detection
at 254 nm. Using the solvent mixture of 2.0 mM CuSO4–MeCN
(90:10), with a flow rate of 1.0 mL/min, the retention times (tR min) for authentic standards were 22.2 for l-Leu and 25.4 for d-Leu. The tR min of the amino acid in the hydrolysate under the same HPLC
conditions was 25.4, indicating the presence of d-Leu in
the hydrolysate. The stereochemistry of the α-hydroxy acid was
determined using a different chiral column for the HPLC analysis [CHIRALPAK
MA (+) (4.6 × 50 mm), Diacel Chemical industries, Ltd.; solvent,
2.0 mM CuSO4–MeCN (95:5); flow rate, 1.0 mL/min;
detection at 254 nm]. The tR min for authentic
standards were 7.0 for R-Hba and 10.0 for S-Hba. The retention time of the α-hydroxy acid in
the hydrolysate under these conditions was 10.0, indicating the presence
of S-Hba in the hydrolysate.
Single-Crystal X-ray Structure
Determination of des-Thiomethyllooekeyolide A (3)
A selected colorless
crystal of 3 was used in this study. X-ray intensity
data were collected at 100 K on a Bruker DUO diffractometer using
Cu Kα radiation (λ = 1.541 78 Å), from an
ImuS power source, and an APEXII CCD area detector. Raw data frames
were read by the program SAINT and integrated using 3D profiling algorithms.
The resulting data were reduced to produce hkl reflections
and their intensities and estimated standard deviations. The data
were corrected for Lorentz and polarization effects, and numerical
absorption corrections were applied based on indexed and measured
faces. The structure was solved and refined in SHELXTL2013, using
full-matrix least-squares refinement. The non-H atoms were refined
with anisotropic thermal parameters, and all of the H atoms were calculated
in idealized positions and refined riding on their parent atoms. The
structure refined with this data confirms the absolute configuration
to be correct as presented here based on the value of the Flack x parameter of 0.02(16). All H2O and hydroxy
protons were obtained from a difference Fourier map and refined freely.
All of those protons are involved in an extensive network of hydrogen
bonding. In the final cycle of refinement, 6020 reflections (of which
5945 are observed with I > 2σ(I)) were used to refine 419 parameters, and the resulting R1, wR2, and S (goodness of fit) were 3.22%, 8.91%, and 1.076, respectively.
The refinement was carried out by minimizing the wR2 function using F2 rather
than F values. R1 is
calculated to provide a reference to the conventional R value, but its function is not minimized.
Identifying the Biosynthetic
Gene Cluster
DNA was extracted
from the BBD layer or from the unicyanobacterial culture with a PowerSoil
DNA isolation kit (MoBio) or Qiagen AllPrep DNA/RNA Micro kit, as
previously described.[11] Metagenomic libraries
were constructed with a TruSeq DNA sample preparation kit (Illumina,
San Diego, CA, USA) and sequenced at the University of Maryland Institute
for Bioscience and Biotechnology Research on an Illumina HiSeq with
a 100 bp paired-end protocol. The unassembled, quality-filtered reads
are publicly available through NCBI’s Sequence Read Archive
(SRA) under the BioProject ID PRJNA269585. Quality-filtering, metagenomic
assembly, and the recovery of metagenome-assembled genomes were previously
described.[11] Biosynthetic gene clusters
in the Roseofilum MAGs were identified with antiSMASH
v. 3.0 to predict open reading frames (ORFs).[26] The predicted ORFs were annotated by performing BLASTp against the
NCBI database. Sequence motifs of KR, AT, and MT domains were determined
after protein sequence alignment by ClustalW, and the corresponding
figures were prepared with Jalview 2.[27] The specificity codes of A domains were predicted with NRPSpredictor2.[28]
H2O2 Activity of Looekeyolide
A (1) and Looekeyolide B (2)
Serial
concentrations
of stock solutions of looekeyolide mixture (1:2:lyngbic acid 1:1:1, estimated by NMR), 2 alone, and
lyngbic acid alone dissolved in DMSO (0.5 μL each) were incubated
with 49.5 μL of 10 μM H2O2 (prepared
using the buffer in the assay kit) at 37 °C in a 96-well plate.
Equivalent amounts of DMSO were used as controls. After a 24 h treatment,
the H2O2 level was measured using the fluorimetric
H2O2 assay kit (Sigma-Aldrich) according to
the manufacturer’s instructions (n = 2). Briefly,
the master mix was first prepared by mixing the red peroxidase substrate
and the horseradish peroxidase with the assay buffer. Master mix (50
μL) was added to each well, and the plate was incubated for
20 min at room temperature in the dark. The fluorescence intensity
(λex = 540/λem = 590 nm) was then
recorded on a SpectraMax M5 (Molecular Devices). The fold change in
H2O2 level for each sample was calculated by
first subtracting the background values for buffer + DMSO and then
comparing the treatment to the DMSO control (value for treatment –
average value for background)/(value for control – average
value for background).HPLC analysis was performed on a Shimadzu
LC-20AB prominence liquid chromatography system with peak detection
by a Shimadzu SPD-20A prominence UV/vis detector. Serial concentrations
of H2O2 (10 μL) were incubated with 990
μL of 10 μM LK mixture (prepared using the same buffer
as the H2O2 assay) in 1.5 mL Eppendorf tubes
at 37 °C (Thermomixer, mixed at 400 rpm for 10 min). After a
24 h treatment, 300 μL of EtOAc was added and subsequently spiked
with nocodazole as the internal standard. The mixtures were vigorously
vortexed for 10 s and centrifuged at 1500g for 30
s, and the EtOAc layer was transferred to a new tube. The extraction
step was repeated one more time, and the collected EtOAc layers were
combined and evaporated to dryness under nitrogen. Samples were reconstituted
in 20 μL of MeOH and injected into the HPLC system for analysis:
column, Phenomenex Synergi 4 μ Hydro-RP 80 Å 250 ×
4.68 mm, 4 μm; flow rate, 0.5 mL/min; UV detection at 220 nm;
linear gradient MeCN–H2O (50–100% MeCN in
40 min, 100% MeCN for 10 min, and then 100–80% MeCN in 10 min).
The retention times of nocodazole, LK-B, and LK-A were 10.6, 13.8,
and 29.1 min, respectively. The fold changes of the HPLC peak area
of 1 and 2 were calculated by comparing
the ratio of the normalized peak area in each H2O2-treated sample with the corresponding value in the DMSO control
sample (peak area of looekeyolide in treatment/peak area of nocodazole
in treatment)/(peak area of looekeyolide in control/peak area of nocodazole
in control). Graphs and data analysis were performed using the Prism
software and analyzed using ANOVA followed by Dunnett’s test.
Ethics
All permits were in place for collection of
these samples from the Florida Keys National Marine Sanctuary (FKNMS-2013-023,
FKNMS-2015-078-A1), the Belize Fisheries Department, and the Guam
Department of Agriculture Division of Aquatic and Wildlife Resources.
Data Accessibility
All data are deposited in publicly
accessible databases (NCBI, CCDC, IMG) as noted in the article. All
NMR data and additional data are provided in the Supporting Information.
Authors: Laurie L Richardson; Raju Sekar; Jamie L Myers; Miroslav Gantar; Joshua D Voss; Longin Kaczmarsky; Elizabeth R Remily; Gregory L Boyer; Paul V Zimba Journal: FEMS Microbiol Lett Date: 2007-05-16 Impact factor: 2.742
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Authors: Patrick Buerger; Elisha M Wood-Charlson; Karen D Weynberg; Bette L Willis; Madeleine J H van Oppen Journal: Front Microbiol Date: 2016-12-22 Impact factor: 5.640
Authors: Guangde Jiang; Peilan Zhang; Ranjala Ratnayake; Guang Yang; Yi Zhang; Ran Zuo; Magan Powell; José C Huguet-Tapia; Khalil A Abboud; Long H Dang; Max Teplitski; Valerie Paul; Rui Xiao; K H Ahammad; Uz Zaman; Zhenquan Hu; Shugeng Cao; Hendrik Luesch; Yousong Ding Journal: Chembiochem Date: 2020-09-30 Impact factor: 3.164