Literature DB >> 30630665

RNA: Nuclear Glue for Folding the Genome.

Ryu-Suke Nozawa1, Nick Gilbert2.   

Abstract

A significant amount of RNA is present in the nucleus of mammalian cells but only a small proportion of it is destined for the cytoplasm and subsequent translation, leaving much RNA to associate with chromatin. Historically, nuclear RNA was thought to interact with proteins to form a filamentous nuclear matrix, but this idea became less popular as more dynamic models of chromatin behaviour became more prevalent. Using new molecular and imaging approaches it is becoming clear that RNA should be considered an integral component of nuclear organisation; it is transcriptionally responsive and interacts with abundant nuclear RNA-binding proteins. We suggest that these protein/RNA structures form a dynamic nuclear mesh that can regulate interphase chromatin structure.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  RNA debris; chromatin; chromatin-associated RNAs; hnRNA; nuclear architecture; transcription

Year:  2019        PMID: 30630665     DOI: 10.1016/j.tcb.2018.12.003

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  18 in total

Review 1.  Probing the function of long noncoding RNAs in the nucleus.

Authors:  Sajal Medha K Akkipeddi; Anthony J Velleca; Dawn M Carone
Journal:  Chromosome Res       Date:  2020-02-06       Impact factor: 5.239

2.  Global profiling of RNA-chromatin interactions reveals co-regulatory gene expression networks in Arabidopsis.

Authors:  Lanxia Li; Haofei Luo; Do-Hwan Lim; Lu Han; Yan Li; Xiang-Dong Fu; Yijun Qi
Journal:  Nat Plants       Date:  2021-10-14       Impact factor: 15.793

3.  In vivo 5-ethynyluridine (EU) labelling detects reduced transcription in Purkinje cell degeneration mouse mutants, but can itself induce neurodegeneration.

Authors:  Lisanne J Van't Sant; Joshua J White; Jan H J Hoeijmakers; Wilbert P Vermeij; Dick Jaarsma
Journal:  Acta Neuropathol Commun       Date:  2021-05-21       Impact factor: 7.801

4.  The landscape of promoter-centred RNA-DNA interactions in rice.

Authors:  Qin Xiao; Xingyu Huang; Yan Zhang; Wei Xu; Yongqing Yang; Qing Zhang; Zhe Hu; Feng Xing; Qianwen Sun; Guoliang Li; Xingwang Li
Journal:  Nat Plants       Date:  2022-02-03       Impact factor: 15.793

Review 5.  Weak interactions in higher-order chromatin organization.

Authors:  Omar L Kantidze; Sergey V Razin
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

Review 6.  Nuclear microenvironment in cancer: Control through liquid-liquid phase separation.

Authors:  Ryu-Suke Nozawa; Tatsuro Yamamoto; Motoko Takahashi; Hiroaki Tachiwana; Reo Maruyama; Toru Hirota; Noriko Saitoh
Journal:  Cancer Sci       Date:  2020-07-21       Impact factor: 6.716

7.  Differential contribution of steady-state RNA and active transcription in chromatin organization.

Authors:  A Rasim Barutcu; Benjamin J Blencowe; John L Rinn
Journal:  EMBO Rep       Date:  2019-08-26       Impact factor: 8.807

Review 8.  Role of nuclear RNA in regulating chromatin structure and transcription.

Authors:  Davide Michieletto; Nick Gilbert
Journal:  Curr Opin Cell Biol       Date:  2019-04-19       Impact factor: 8.382

9.  RNA m6A modification orchestrates a LINE-1-host interaction that facilitates retrotransposition and contributes to long gene vulnerability.

Authors:  Feng Xiong; Ruoyu Wang; Joo-Hyung Lee; Shenglan Li; Shin-Fu Chen; Zian Liao; Lana Al Hasani; Phuoc T Nguyen; Xiaoyu Zhu; Joanna Krakowiak; Dung-Fang Lee; Leng Han; Kuang-Lei Tsai; Ying Liu; Wenbo Li
Journal:  Cell Res       Date:  2021-06-09       Impact factor: 46.297

10.  Nascent RNA scaffolds contribute to chromosome territory architecture and counter chromatin compaction.

Authors:  Kevin Michael Creamer; Heather Jill Kolpa; Jeanne Bentley Lawrence
Journal:  Mol Cell       Date:  2021-07-27       Impact factor: 19.328

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