Literature DB >> 30625048

A Review of Freely Available, Open-Source Software for the Automated Analysis of the Behavior of Adult Zebrafish.

Juan E Franco-Restrepo1,2, Diego A Forero1,2, Rafael A Vargas1,2.   

Abstract

The analysis of behavior in animal models is an important objective in many research fields, including neuroscience, psychology, toxicology, and neuropsychopharmacology. Animal models have been used for many years, and several behavioral paradigms, such as locomotor activity, social interactions, and cognitive behavior, have been studied in animal models to correlate the behaviors with pharmacological or environmental interventions and with molecular, biochemical, and physiological findings. We reviewed the literature looking for open-source, freely available software to analyze animal behavior and found 12 freely available programs: ToxTrack, EthoWatcher, Mouse Behavior Tracker, Mouse Move, JAABA, wrMTrck, AnimalTracker, idTracker, Ctrax, Mousetracker, VideoHacking, and Cowlog, which were developed with different programs, work on different platforms, and have particular types of inputs and outputs and analysis capabilities. We reviewed some examples of their use, tested some of them, and provided several recommendations for the future development of programs for the automated analysis of behavior in animal models. In conclusion, we show freely available software for the automated analysis of behavior in animal models such as adult zebrafish and provide information for researchers and students looking for quick, easy-to-implement, and inexpensive behavior analysis alternatives.

Entities:  

Keywords:  adult zebrafish behavior; animal behavior; automated analysis; computational neuroscience; neurobiology; open-source software

Year:  2019        PMID: 30625048     DOI: 10.1089/zeb.2018.1662

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  8 in total

Review 1.  A review of 28 free animal-tracking software applications: current features and limitations.

Authors:  Veronica Panadeiro; Alvaro Rodriguez; Jason Henry; Donald Wlodkowic; Magnus Andersson
Journal:  Lab Anim (NY)       Date:  2021-07-29       Impact factor: 12.625

2.  Impact of test chamber design on spontaneous behavioral responses of model crustacean zooplankton Artemia franciscana.

Authors:  Jason Henry; Yutao Bai; Daniel Williams; Adrian Logozzo; Alex Ford; Donald Wlodkowic
Journal:  Lab Anim (NY)       Date:  2022-02-03       Impact factor: 12.625

Review 3.  The zebrafish subcortical social brain as a model for studying social behavior disorders.

Authors:  Yijie Geng; Randall T Peterson
Journal:  Dis Model Mech       Date:  2019-08-06       Impact factor: 5.758

4.  Impact of digital video analytics on accuracy of chemobehavioural phenotyping in aquatic toxicology.

Authors:  Jason Henry; Alvaro Rodriguez; Donald Wlodkowic
Journal:  PeerJ       Date:  2019-08-05       Impact factor: 2.984

5.  Comparison between two- and three-dimensional scoring of zebrafish response to psychoactive drugs: identifying when three-dimensional analysis is needed.

Authors:  Simone Macrì; Romain J G Clément; Chiara Spinello; Maurizio Porfiri
Journal:  PeerJ       Date:  2019-10-16       Impact factor: 2.984

6.  Avoidance behavior of juvenile common toads (Bufo bufo) in response to surface contamination by different pesticides.

Authors:  Christoph Leeb; Sara Kolbenschlag; Aurelia Laubscher; Elena Adams; Carsten A Brühl; Kathrin Theissinger
Journal:  PLoS One       Date:  2020-11-30       Impact factor: 3.240

7.  Opioid-free sedation for atlantoaxial cerebrospinal fluid collection in adult horses.

Authors:  Gemma Cock; Zachary Blakeney; Jorge A Hernandez; Sally DeNotta
Journal:  J Vet Intern Med       Date:  2022-05-31       Impact factor: 3.175

8.  Parallel Fish School Tracking Based on Multiple Appearance Feature Detection.

Authors:  Zhitao Wang; Chunlei Xia; Jangmyung Lee
Journal:  Sensors (Basel)       Date:  2021-05-17       Impact factor: 3.576

  8 in total

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