| Literature DB >> 30621105 |
Nguyen Thuy Duong1,2, Nguyen Thy Ngoc3,4, Nguyen Tran Minh Thang5,6,7, Bach Thi Hoai Phuong8, Nguyen Thanh Nga9, Nguyen Doan Tinh10, Do Hai Quynh11, Nguyen Dang Ton9,12, Nong Van Hai13,14.
Abstract
Background and objective: Gout is a common form of inflammatory arthritis caused by the crystallization of uric acid. Previous studies have demonstrated that the genetic predisposition of gout varies in different ethnic populations. However the association study of genetic variants with gout remains unknown in the Vietnamese population. Our study aimed to assess the relationship between polymorphisms in ABCG2 and SLC22A12 and gout susceptibility in Vietnamese. Materials and methods: Genomic DNA was extracted from blood of a total of 170 patients with gout and 351 healthy controls. We genotyped single nucleotide polymorphisms (SNPs): rs72552713, rs12505410 of the ABCG2 gene and rs11231825, rs7932775 of the SLC22A12 gene using polymerase chain reaction⁻restriction fragment length polymorphism (PCR⁻RFLP) and then confirmed 10% of randomly selected subjects by Sanger sequencing.Entities:
Keywords: ABCG2; SLC22A12; Vietnamese; gout; polymorphism
Mesh:
Substances:
Year: 2019 PMID: 30621105 PMCID: PMC6359270 DOI: 10.3390/medicina55010008
Source DB: PubMed Journal: Medicina (Kaunas) ISSN: 1010-660X Impact factor: 2.430
List of primers used for polymerase chain reaction–restriction fragment length polymorphism (PCR–RFLP) amplification and sequencing.
| PCR Primer Sequence | |||
|---|---|---|---|
|
|
|
|
|
| AGCTGCAAGGAAAGATCCAA | GGGTAAGTGCTTTGGCTGAT | 166 | |
| CCCTTGGCACCTTAAATGAA | ATAGGTGGCTGGCCCTATTT | 308 | |
| CCCTAGAGGTCACCAGACCA | ACTGGGCCATGGGCTTCTGATC | 168 | |
| GCCTGAAAGTCAGGGACAAG | ACCACACAAGAGGGAGATGC | 325 | |
|
|
| ||
| AGCTGCAAGGAAAGATCCAA | |||
| CCCTTGGCACCTTAAATGAA | |||
| CCCTAGAGGTCACCAGACCA | |||
| GCCTGAAAGTCAGGGACAAG | |||
Demographic and clinical characteristics of gout patients and controls.
| Characteristics | Controls ( | Gout Patients ( | Total ( | |
|---|---|---|---|---|
| Age | 52 (13) | 52 (20) | 52 (15) | 0.469 (2) |
| Height (cm) | 165 (8) | 165 (9.3) | 165 (9) | 0.697 (2) |
| Weight (kg) | 66 (11) | 67 (13) | 66 (12) | 0.026 (2) |
| BMI (kg/m2) | 24.11 (4.4) | 24.78 (3.83) | 24.31 (4.14) | 0.038 (2) |
| SUA (mg/dL) | 6.9 (1.98) | 9.25 (2.18) | 7.61 (2.66) | <0.001 (2) |
| ALT (U/L) | 26.4 (18.8) | 26.05 (21.52) | 26.2 (18.95) | 0.567 (2) |
| AST (U/L) | 23.1 (9.1) | 23.1 (11.2) | 23.1 (9.95) | 0.354 (2) |
| BUN (mg/dL) | 21.4 (6.1) | 22.52 (10.07) | 21.93 (7.9) | 0.053 (2) |
| CREA (mg/dL) | 1.06 (0.17) | 1.07 (0.16) | 1.06 (0.17) | 0.722 (2) |
| CRP (mg/dL) | 1.56 (4.34) | 3.53 (6.7) | 2.02 (5.24) | <0.001 (2) |
| Diastolic BP (mmHg) | 70 (10) | 70 (10) | 70 (10) | 0.533 (2) |
| Systolic BP (mmHg) | 120 (20) | 120 (20) | 120 (20) | 0.84 (2) |
| GLU (mg/dL) | 101 (13) | 103 (15.75) | 101 (14) | 0.145 (2) |
| HDL-C (mg/dL) | 45.6 (16) | 43.75 (19.12) | 44.6 (16.6) | 0.204 (2) |
| LDL-C (mg/dL) | 120.8 (53.8) | 126 (56.65) | 122.3 (53.9) | 0.04 (2) |
| Hyperuricemia * | 166 (47.3%) | 157 (92.4%) | 323 (62%) | <0.001 (1) |
| TG (mg/dL) | 169.2 (133.4) | 231.2 (164.85) | 189.2 (142.35) | 0.001 (2) |
| WBC (per µL) | 7300 (2550) | 7110 (2477.5) | 7260 (2540) | 0.778 (2) |
ALT (alanine aminotransferase), AST (aspartate transaminase), BMI (body mass index), BUN (blood urea nitrogen), BP (blood pressure), CREA (creatinine), CRP (C-reactive protein), GLU (glucose), HDL-C (high density lipoprotein-cholesterol), LDL-C (low density lipoprotein-cholesterol), SUA (serum uric acid), TG (triglyceride) and WBC (white blood cell count); Data presented as either counts (percentage) * or median (interquartile range); n: number of individuals in group; (1) p-value calculated by Chi-squared test; (2) p-value calculated by Mann–Whitney U test; p < 0.05 (in bold) indicates statistical significance.
General information on the studied single nucleotide polymorphisms (SNPs).
| Gene/SNP | Position | Type of Variant | Allele | MAF in Gout Group | HWE in Gout Group ( | MAF in Control Group | HWE in Control Group ( | HWE in all Population ( |
|---|---|---|---|---|---|---|---|---|
| 4:88131805 | Stop gained | C/T | 0.029 | 0.925 | 0.001 | 1.000 | 0.97 | |
| 4:88109689 | Intron | T/G | 0.403 | 0.374 | 0.385 | 1.000 | 0.708 | |
| 11:64592802 | Synonymous | T/C | 0.224 | 0.304 | 0.288 | 0.438 | 0.914 | |
| 11:64600390 | Missense | C/T | 0.418 | 0.03 | 0.487 | 0.074 | 0.003 |
Position refers to the GRCh38.p10 assembly; MAF: Minor allele frequency; HWE: Hardy-Weinberg equilibrium was checked by Chi-squared test.
Associations of ABCG2 and SLC22A12 SNPs with gout.
| SNP/Gene | Test model | Controls ( | Gout patients ( | OR | 95% CI | |
|---|---|---|---|---|---|---|
|
| Dominant | |||||
|
| CC | 350 (99.7%) | 160 (94.1%) | 1.00 | ||
| CT | 1 (0.3%) | 10 (5.9%) | 21.875 | 2.77–172.34 | <0.001 (1) | |
| Alleles | ||||||
| C | 701 (99.86%) | 330 (97.06%) | 1.00 | |||
| T | 1 (0.14%) | 10 (2.94%) | 21.19 | 3.00–918.96 | <0.001 (1) | |
|
| Additive | 0.458 (2) | ||||
|
| TT | 133 (37.9%) | 66 (38.8%) | 1.00 | ||
| TG | 167 (47.6%) | 73 (42.9%) | 0.881 | 0.588–1.319 | 0.538 (2) | |
| GG | 51 (14.5%) | 31 (18.2%) | 1.225 | 0.717–2.092 | 0.457 (2) | |
| Dominant | ||||||
| TT | 133 (37.9%) | 66 (38.8%) | 1.00 | |||
| TG + GG | 218 (62.1%) | 104 (61.2%) | 0.961 | 0.66–1.401 | 0.837 (2) | |
| Recessive | ||||||
| TT + TG | 300 (85.5%) | 139 (81.8%) | 1.00 | |||
| GG | 51 (14.5%) | 31 (18.2%) | 1.312 | 0.804–2.141 | 0.276 (2) | |
| Alleles | ||||||
| T | 433 (61.7%) | 205 (60.3%) | 1.00 | |||
| G | 269 (38.3%) | 135 (39.7%) | 1.06 | 0.805–1.393 | 0.684 (2) | |
|
| Additive | 0.021 (2) | ||||
|
| TT | 183 (52.1%) | 99 (58.2%) | 1.00 | ||
| TC | 134 (38.2%) | 66 (38.8%) | 0.91 | 0.621–1.335 | 0.631 (2) | |
| CC | 34 (9.7%) | 5 (2.9%) | 0.272 | 0.103–0.717 | 0.005 (2) | |
| Dominant | ||||||
| TT | 183 (52.1%) | 99 (58.2%) | 1.00 | |||
| TC + CC | 168 (47.9%) | 71 (41.8%) | 0.781 | 0.54–1.131 | 0.19 (2) | |
| Recessive | ||||||
| TT + TC | 317 (90.3%) | 165 (97.1%) | 1.00 | |||
| CC | 34 (9.7%) | 5 (2.9%) | 0.283 | 0.108–0.736 | 0.006 (2) | |
| Alleles | ||||||
| T | 500 (71.2%) | 264 (77.6%) | 1.00 | |||
| C | 202 (28.8%) | 76 (22.4%) | 0.712 | 0.526–0.964 | 0.0302 (2) | |
95% CI: 95% confidence interval of odds ratio; p-values calculated by either Fisher’s exact test (1) or Chi-squared test (2); p < 0.05 (in bold) indicates statistical significance; OR: Odds ratio.
Association of SNPs with clinical characteristics among the studied population.
| SNP/Gene | Test Model | Genotype | Uric Acid | Hyperuricemia | ||
|---|---|---|---|---|---|---|
| Median (Interquartile Range) | Positive | |||||
|
| Dominant | 0.004 | 0.008 | |||
|
| CC | 7.57 (2.65) | 311 (61%) | |||
| CT | 9.2 (2.28) | 11 (100%) | ||||
|
| Additive | 0.131 | 0.791 | |||
|
| TT | 7.66 (2.77) | 126 (63.6%) | |||
| TG | 7.65 (2.67) | 147 (61.5%) | ||||
| GG | 7.45 (2.47) | 50 (59.5%) | ||||
| Dominant | 0.105 | 0.546 | ||||
| TT | 7.66 (2.77) | 126 (63.6%) | ||||
| TG + GG | 7.58 (2.65) | 197 (61%) | ||||
| Recessive | 0.092 | 0.61 | ||||
| TT + TG | 7.65 (2.47) | 273 (62.5%) | ||||
| GG | 7.45 (2.47) | 50 (59.5%) | ||||
|
| Additive | 0.057 | 0.178 | |||
|
| TT | 7.6 (2.7) | 175 (62.1%) | |||
| TC | 7.7 (2.6) | 129 (64.5%) | ||||
| CC | 7.0 (2.6) | 19 (48.7%) | ||||
| Dominant | 0.647 | 0.975 | ||||
| TT | 7.6 (2.7) | 175 (62.1%) | ||||
| TC + CC | 7.61 (2.73) | 148 (61.9%) | ||||
| Recessive | 0.018 | 0.076 | ||||
| TT + TC | 7.69 (2.66) | 304 (63.1%) | ||||
| CC | 7.0 (2.6) | 19 (48.7%) | ||||
Data presented as median (interquartile range); n: number of individuals in group; p-values calculated by either Mann-Whitney U test (1) or Chi-squared test (2); p < 0.05 (in bold) indicates statistical significance.
Association of rs12505410 genotypes and clinical characteristics among gout patients.
| rs12505410 | Genotype | |||||
|---|---|---|---|---|---|---|
| TT ( | TG ( | GG ( | ||||
| CREA (mg/dL) | 1.04 (0.26) | 1.07 (0.17) | 1.1 (0.12) | 0.444 | 0.291 | 0.289 |
| CRP (mg/dL) | 3.67 (5.8) | 3.45 (6.2) | 3.68 (7.9) | 0.661 | 0.992 | 0.398 |
| Diastolic BP (mmHg) | 70 (10) | 80 (10) | 70 (10) | 0.385 | 0.262 | 0.749 |
| SUA (mg/dL) | 9.54 (2.38) | 9.62 (2.12) | 8.5 (1.48) | 0.011 | 0.23 | 0.003 |
| Systolic BP (mmHg) | 120 (20) | 120 (20) | 110 (17.5) | 0.064 | 0.707 | 0.045 |
CREA (creatinine), CRP (C-reactive protein), BP (blood pressure), SUA (serum uric acid); Data presented as median (interquartile range); n: number of individuals in group; p-values calculated by Mann–Whitney U test; p < 0.05 (in bold) indicates statistical significance.