| Literature DB >> 30618562 |
Weihao Ge1,2, Eric Jakobsson1,2,3.
Abstract
Lithium has many widely varying biochemical and phenomenological effects, suggesting that a systems biology approach is required to understand its action. Multiple lines of evidence point to lithium intake and consequent blood levels as important determinants of incidence of neurodegenerative disease, showing that understanding lithium action is of high importance. In this paper we undertake first steps toward a systems approach by analyzing mutual enrichment between the interactomes of lithium-sensitive enzymes and the pathways associated with affective and neurodegenerative disorders. This work integrates information from two important databases, STRING and KEGG pathways. We find that for the majority of neurodegenerative disorders the mutual enrichment is many times greater than chance, reinforcing previous lines of evidence that lithium is an important influence on incidence of neurodegeneration. Our work suggests rational prioritization for which disorders are likely to be most sensitive to lithium and identifies genes that are likely to be useful targets for therapy adjunct to lithium.Entities:
Keywords: affective disorders; biochemical networks; biochemical pathways; lithium; neurodegenerative disorders; systems biology
Year: 2018 PMID: 30618562 PMCID: PMC6300566 DOI: 10.3389/fnins.2018.00933
Source DB: PubMed Journal: Front Neurosci ISSN: 1662-453X Impact factor: 4.677
Interactome parameters and sizes for lithium-sensitive genes.
| BDNF | 0.4 | 1 | 335 |
| BPNT1 | 0.6 | 2 | 388 |
| DISC1 | 0.8 | 2 | 113 |
| DIXDC1 | 0.6 | 2 | 378 |
| FBP1 | 0.9 | 2 | 175 |
| GSK3A | 0.4 | 1 | 307 |
| GSK3B | 0.4 | 1 | 225 |
| IMPAD | 0.9 | 2 | 504 |
| INPP1 | 0.7 | 2 | 228 |
| PGM1 | 0.4 | 1 | 176 |
Figure 1Heatmap for Lithium-sensitive enzyme interactome enrichment in disease-related pathways. The empirical enrichment p-value was calculated for each set of disease-associated genes. (A,B) are disorders where lithium treatment has proved to be effective and both show high enrichment. (C,D) are diseases where the effect of lithium treatment is unknown. (C) shows relatively low enrichment while (D) shows high enrichment. (E) is a disease where there is suggestive but not conclusive evidence for possible effectiveness of lithium therapy and shows high enrichment.
Top 34 neuron-related disease by lithium sensitivity.
| 1. Dravet syndrome | 1718.943899 | 0.0006 |
| 2. HTLV1-Associated Myelopathy (HAM) | 626.8531541 | 0.0016 |
| 3. Congenital pain insensitivity with anhidrosis | 466.9837537 | 0.0021 |
| 4. Hemorrhagic destruction of the brain, subependymal calcification, and cataracts | 418.143026 | 0.0024 |
| 5. Rasmussen encephalitis | 293.1481892 | 0.0034 |
| 6. Lattice corneal dystrophies (LCD) | 263.6451883 | 0.0038 |
| 7. Subependymal giant cell astrocytoma | 246.0470815 | 0.0041 |
| 8. Bipolar Disorder | 239.2876 | 0.0042 |
| 9. Familial episodic pain syndrome (FEPS) | 231.5937968 | 0.0043 |
| 10. Familial exudative vitreoretinopathy (FEVR) | 205.3474156 | 0.0049 |
| 11. Focal dermal hypoplasia | 205.3474156 | 0.0049 |
| 12. Choroid plexus papilloma | 198.0197413 | 0.0051 |
| 13. Juvenile-onset dystonia | 183.6715435 | 0.0054 |
| 14. Prion diseases | 175.0031999 | 0.0057 |
| 15. Axenfeld-Rieger syndrome (ARS) | 169.1174332 | 0.0059 |
| 16. Congenital stromal corneal dystrophy (CSCD) | 169.1174332 | 0.0059 |
| 17. Ring dermoid of cornea | 169.1174332 | 0.0059 |
| 18. Stapes ankylosis with broad thumb and toes | 169.1174332 | 0.0059 |
| 19. Benign familial neonatal and infantile epilepsies | 153.4488999 | 0.0065 |
| 20. Alzheimer's disease | 148.6362283 | 0.0067 |
| 21. Neurosis | 132.0111986 | 0.0076 |
| 22. Schizophrenia | 132.0111986 | 0.0076 |
| 23. Pituitary adenomas | 123.9488444 | 0.0081 |
| 24. Febrile seizures | 108.3195689 | 0.0093 |
| 25. Episodic ataxias | 104.5457633 | 0.0095 |
| 26. Familial or sporadic hemiplegic migraine | 104.5457633 | 0.0095 |
| 27. Cerebral amyloid angiopathy (CAA) | 89.36992044 | 0.0112 |
| 28. Major depressive disorder | 89.36992044 | 0.0112 |
| 29. Epileptic encephalopathy with continuous spike-waves during slow-wave sleep | 87.85098473 | 0.0114 |
| 30. Frontotemporal lobar degeneration (FTLD) | 75.82609324 | 0.0132 |
| 31. Cerebral palsy | 72.92882566 | 0.0137 |
| 32. Generalized epilepsy and paroxysmal dyskinesia (GEPD) | 69.3705138 | 0.0144 |
| 33. Amyotrophic lateral sclerosis (ALS) | 67.25422275 | 0.0149 |
| 34. Fleck corneal dystrophy (FCD) | 63.08690002 | 0.0158 |
Figure 2Log10 of sensitivity index of lithium-sensitive interactome for null sets, metabolic pathways, and pathways associated with disease of the nervous system.
Gene counts normalized by pathway number for genes appearing at intersection of interactomes and pathways.
| MAPK3 | 0 | 0 | 0 | 13.33 | ||||
| APP | 0 | 0 | 0 | 0 | 0 | 12 | ||
| TP53 | 0 | 0 | 0 | 0 | 0 | 7.5 | ||
| RAC1 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PSEN1 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PLCB3 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PLCB2 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PLCB1 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PPP3CC | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PRKACB | 0 | 0 | 0 | 0 | 0 | 6 | ||
| ITPR1 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PPP3CA | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PRKACG | 0 | 0 | 0 | 0 | 0 | 6 | ||
| NOS1 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PLCB4 | 0 | 0 | 0 | 0 | 0 | 6 | ||
| PRKACA | 0 | 0 | 0 | 0 | 0 | 6 | ||
| CYCS | 0 | 0 | 0 | 0 | 0 | 6 | ||
| HTR2A | 0 | 0 | 0 | 0 | 2 | 5 | ||
| NOTCH1 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | |
| GAPDH | 0 | 0 | 0 | 0 | 0 | 0 | 5 | |
| MAP2K1 | 0 | 0 | 0 | 0 | 4.67 | |||
| BAX | 0 | 0 | 0 | 0 | 4.67 | |||
| GRM1 | 0 | 0 | 0 | 0 | 0 | 4.5 | ||
| TNF | 0 | 0 | 0 | 0 | 0 | 4 | ||
| GNAQ | 0 | 0 | 0 | 0 | 0 | 4 | ||
| GNG2 | 0 | 0 | 0 | 0 | 0 | 4 | ||
| ITPR3 | 0 | 0 | 0 | 0 | 0 | 4 | ||
| CDK5 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | |
| FYN | 0 | 0 | 0 | 0 | 0 | 0 | 4 | |
| IL1B | 0 | 0 | 0 | 0 | 0 | 4 | ||
| ITPR2 | 0 | 0 | 0 | 0 | 0 | 4 | ||
| PRKCA | 0 | 0 | 0 | 0 | 0 | 0 | 4 | |
| PPP3CB | 0 | 0 | 0 | 0 | 0 | 4 |
Table truncated for ease of display. Full table in .