Literature DB >> 30617834

Archiving of Integrative Structural Models.

Helen M Berman1, Jill Trewhella2,3, Brinda Vallat4, John D Westbrook5.   

Abstract

Integrative or hybrid structural biology involves the determination of three-dimensional structures of macromolecular assemblies by combining information from a variety of experimental and computational methods. Archiving the results of integrative/hybrid modeling methods have complex requirements and existing archiving mechanisms are insufficient to handle these pre-requisites. Three concepts important for archiving integrative/hybrid models are presented in this chapter: (1) building a federated network of structural model and experimental data archives, (2) development of a common set of data standards, and (3) creation of mechanisms for interoperation and data exchange among the repositories in a federation. Methods proposed for achieving these objectives are also discussed.

Entities:  

Keywords:  Data exchange; Data standards; Integrative/hybrid modeling methods; PDBx/mmCIF; Protein Data Bank; Structural biology federation

Mesh:

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Year:  2018        PMID: 30617834     DOI: 10.1007/978-981-13-2200-6_16

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  2 in total

Review 1.  From integrative structural biology to cell biology.

Authors:  Andrej Sali
Journal:  J Biol Chem       Date:  2021-05-03       Impact factor: 5.157

Review 2.  Growing a thriving international community for small-angle scattering through collaboration.

Authors:  Jill Trewhella
Journal:  J Appl Crystallogr       Date:  2021-07-29       Impact factor: 3.304

  2 in total

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