Literature DB >> 30615413

Protein Hydration Waters Are Susceptible to Unfavorable Perturbations.

Nicholas B Rego, Erte Xi, Amish J Patel.   

Abstract

The interactions of a protein, its phase behavior, and, ultimately, its ability to function are all influenced by the interactions between the protein and its hydration waters. Here, we study proteins with a variety of sizes, shapes, chemistries, and biological functions and characterize their interactions with their hydration waters using molecular simulations and enhanced sampling techniques. We find that, akin to extended hydrophobic surfaces, proteins situate their hydration waters at the edge of a dewetting transition, making them susceptible to unfavorable perturbations. We also find that the strength of the unfavorable potential needed to trigger dewetting is roughly the same for all proteins studied here and depends primarily on the width of the hydration shell being perturbed. Our findings establish a framework for systematically classifying protein patches according to how favorably they interact with water.

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Year:  2019        PMID: 30615413     DOI: 10.1021/jacs.8b11448

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

1.  Navigating the waters of membrane design.

Authors:  Henry S Ashbaugh
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-05       Impact factor: 11.205

2.  Identifying hydrophobic protein patches to inform protein interaction interfaces.

Authors:  Nicholas B Rego; Erte Xi; Amish J Patel
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

3.  Effects of low-molecular-weight polyols on the hydration status of the light-harvesting complex 2 from Rhodobacter sphaeroides 2.4.1.

Authors:  Ying Shi; Jie Yu; Yu-Chen Liu; Peng Wang; Jian-Ping Zhang
Journal:  Photochem Photobiol Sci       Date:  2021-04-28       Impact factor: 3.982

4.  Characterizing Polymer Hydration Shell Compressibilities with the Small-System Method.

Authors:  Madhusmita Tripathy; Swaminath Bharadwaj; Shadrack Jabes B; Nico F A van der Vegt
Journal:  Nanomaterials (Basel)       Date:  2020-07-25       Impact factor: 5.076

5.  Exploring the Hydration Water Character on Atomically Dislocated Surfaces by Surface Enhanced Raman Spectroscopy.

Authors:  Dongha Shin; Hoyoung Seo; Wonho Jhe
Journal:  ACS Cent Sci       Date:  2020-09-30       Impact factor: 14.553

6.  Membrane hydrophobicity determines the activation free energy of passive lipid transport.

Authors:  Julia R Rogers; Gustavo Espinoza Garcia; Phillip L Geissler
Journal:  Biophys J       Date:  2021-07-22       Impact factor: 3.699

  6 in total

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