Literature DB >> 30611426

The Preparation and Solution NMR Spectroscopy of Human Glycoproteins Is Accessible and Rewarding.

Adam W Barb1, Daniel J Falconer2, Ganesh P Subedi2.   

Abstract

The majority of proteins excreted by human cells and borne at the cell surface are modified with carbohydrates. Glycoproteins mediate a wide range of processes and adopt fundamental roles in many diseases. The carbohydrates covalently attached to proteins during maturation in the cell directly impact protein structure and function as integral and indispensable components. However, the ability to study the structure of glycoproteins to high resolution was historically limited by technical barriers including a limited availability of appropriate recombinant protein expression platforms, limited methods to generate compositional homogeneity, and difficulties analyzing glycoprotein composition. Furthermore, glycoproteins and in particular the glycan moieties themselves often exhibit a high degree of conformational heterogeneity. Solution NMR spectroscopy is a powerful tool to study biological macromolecules that is capable of characterizing mobile elements of molecules with atomic-level resolution. Methods to express glycoproteins, incorporate stable isotope labels, and analyze glycoproteins have recently opened new avenues to prepare and investigate glycoproteins. These methods are accessible to many laboratories with experience expressing and purifying proteins from prokaryotic expression hosts.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Glycan remodeling; Glycoprotein expression; Glycosylhydrolase; Glycosyltransferase; HEK293; N-glycoprotein; O-glycoprotein

Mesh:

Substances:

Year:  2018        PMID: 30611426      PMCID: PMC6462349          DOI: 10.1016/bs.mie.2018.08.021

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  43 in total

1.  A comprehensive procedure for preparation of partially methylated alditol acetates from glycoprotein carbohydrates.

Authors:  K R Anumula; P B Taylor
Journal:  Anal Biochem       Date:  1992-05-15       Impact factor: 3.365

2.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

Review 3.  Chemical and chemoenzymatic synthesis of glycoproteins for deciphering functions.

Authors:  Lai-Xi Wang; Mohammed N Amin
Journal:  Chem Biol       Date:  2014-01-16

4.  Valproic acid: a viable alternative to sodium butyrate for enhancing protein expression in mammalian cell cultures.

Authors:  Gaurav Backliwal; Markus Hildinger; Ivan Kuettel; Fanny Delegrange; David L Hacker; Florian M Wurm
Journal:  Biotechnol Bioeng       Date:  2008-09-01       Impact factor: 4.530

5.  High Yield Expression of Recombinant Human Proteins with the Transient Transfection of HEK293 Cells in Suspension.

Authors:  Ganesh P Subedi; Roy W Johnson; Heather A Moniz; Kelley W Moremen; Adam Barb
Journal:  J Vis Exp       Date:  2015-12-28       Impact factor: 1.355

6.  The core trisaccharide of an N-linked glycoprotein intrinsically accelerates folding and enhances stability.

Authors:  Sarah R Hanson; Elizabeth K Culyba; Tsui-Ling Hsu; Chi-Huey Wong; Jeffery W Kelly; Evan T Powers
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-09       Impact factor: 11.205

7.  Restricted motion of the conserved immunoglobulin G1 N-glycan is essential for efficient FcγRIIIa binding.

Authors:  Ganesh P Subedi; Quinlin M Hanson; Adam W Barb
Journal:  Structure       Date:  2014-09-04       Impact factor: 5.006

8.  Backbone (1)H, (13)C, and (15)N resonance assignments of the Fc fragment of human immunoglobulin G glycoprotein.

Authors:  Hirokazu Yagi; Ying Zhang; Maho Yagi-Utsumi; Takumi Yamaguchi; Shigeru Iida; Yoshiki Yamaguchi; Koichi Kato
Journal:  Biomol NMR Assign       Date:  2014-10-08       Impact factor: 0.746

9.  pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification.

Authors:  Ming-Qi Liu; Wen-Feng Zeng; Pan Fang; Wei-Qian Cao; Chao Liu; Guo-Quan Yan; Yang Zhang; Chao Peng; Jian-Qiang Wu; Xiao-Jin Zhang; Hui-Jun Tu; Hao Chi; Rui-Xiang Sun; Yong Cao; Meng-Qiu Dong; Bi-Yun Jiang; Jiang-Ming Huang; Hua-Li Shen; Catherine C L Wong; Si-Min He; Peng-Yuan Yang
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

10.  Mouse IgG2c Fc loop residues promote greater receptor-binding affinity than mouse IgG2b or human IgG1.

Authors:  Daniel J Falconer; Adam W Barb
Journal:  PLoS One       Date:  2018-02-06       Impact factor: 3.240

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  5 in total

1.  Decoding human-macaque interspecies differences in Fc-effector functions: The structural basis for CD16-dependent effector function in Rhesus macaques.

Authors:  William D Tolbert; Neelakshi Gohain; Paul G Kremer; Andrew P Hederman; Dung N Nguyen; Verna Van; Rebekah Sherburn; George K Lewis; Andrés Finzi; Justin Pollara; Margaret E Ackerman; Adam W Barb; Marzena Pazgier
Journal:  Front Immunol       Date:  2022-09-05       Impact factor: 8.786

2.  Proceedings of workshop: "Neuroglycoproteins in health and disease", INNOGLY cost action.

Authors:  Esther Llop; Ana Ardá; Elsa Zacco; Roisin O'Flaherty; María-Salud García-Ayllón; Massimo Aureli; Moran Frenkel-Pinter; Celso A Reis; Ole K Greiner-Tollersrud; Inmaculada Cuchillo-Ibáñez
Journal:  Glycoconj J       Date:  2022-08-24       Impact factor: 3.009

Review 3.  Glycan structures and their interactions with proteins. A NMR view.

Authors:  Ana Gimeno; Pablo Valverde; Ana Ardá; Jesús Jiménez-Barbero
Journal:  Curr Opin Struct Biol       Date:  2019-12-10       Impact factor: 6.809

Review 4.  Novel NMR Avenues to Explore the Conformation and Interactions of Glycans.

Authors:  Pablo Valverde; Jon I Quintana; Jose I Santos; Ana Ardá; Jesús Jiménez-Barbero
Journal:  ACS Omega       Date:  2019-08-19

5.  NMR Spectroscopic Characterization of the C-Mannose Conformation in a Thrombospondin Repeat Using a Selective Labeling Approach.

Authors:  Hendrik R A Jonker; Krishna Saxena; Aleksandra Shcherbakova; Birgit Tiemann; Hans Bakker; Harald Schwalbe
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-03       Impact factor: 15.336

  5 in total

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