Literature DB >> 30610641

Plant Gene Knockout and Knockdown by CRISPR-Cpf1 (Cas12a) Systems.

Yingxiao Zhang1, Yong Zhang2, Yiping Qi3,4.   

Abstract

CRISPR-Cpf1 (Cas12a) is a class II type V endonuclease, which has been used as a genome editing tool in different biological systems. Here we describe a fast, efficient, and user-friendly system for CRISPR-Cpf1 expression vector assembly. In this system, the Pol II promoter is used to drive the expression of both Cpf1 and its crRNA, with the crRNA flanked by hammerhead (HH) and hepatitis delta virus (HDV) ribozyme RNAs for precise crRNA processing. All the components of this system can be modified depending on plant species and experimental goals. Using this system, nearly 100% editing efficiency and 90% gene expression decrease were achieved in rice and Arabidopsis, respectively.

Entities:  

Keywords:  CRISPR-Cpf1 (Cas12a); Gateway cloning; Plant gene knockdown; Plant gene knockout

Mesh:

Year:  2019        PMID: 30610641     DOI: 10.1007/978-1-4939-8991-1_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

Review 1.  Applying gene editing to tailor precise genetic modifications in plants.

Authors:  Joyce Van Eck
Journal:  J Biol Chem       Date:  2020-07-28       Impact factor: 5.157

Review 2.  CRISPR-associated nucleases: the Dawn of a new age of efficient crop improvement.

Authors:  Rishikesh Ghogare; Bruce Williamson-Benavides; Fabiola Ramírez-Torres; Amit Dhingra
Journal:  Transgenic Res       Date:  2019-11-01       Impact factor: 3.145

3.  Robustly improved base editing efficiency of Cpf1 base editor using optimized cytidine deaminases.

Authors:  Siyu Chen; Yingqi Jia; Zhiquan Liu; Huanhuan Shan; Mao Chen; Hao Yu; Liangxue Lai; Zhanjun Li
Journal:  Cell Discov       Date:  2020-09-15       Impact factor: 10.849

4.  Expanding the scope of plant genome engineering with Cas12a orthologs and highly multiplexable editing systems.

Authors:  Yingxiao Zhang; Qiurong Ren; Xu Tang; Shishi Liu; Aimee A Malzahn; Jianping Zhou; Jiaheng Wang; Desuo Yin; Changtian Pan; Mingzhu Yuan; Lan Huang; Han Yang; Yuxin Zhao; Qing Fang; Xuelian Zheng; Li Tian; Yanhao Cheng; Ysa Le; Bailey McCoy; Lidiya Franklin; Jeremy D Selengut; Stephen M Mount; Qiudeng Que; Yong Zhang; Yiping Qi
Journal:  Nat Commun       Date:  2021-03-29       Impact factor: 14.919

5.  Ribozyme-mediated CRISPR/Cas9 gene editing in pyrethrum (Tanacetum cinerariifolium) hairy roots using a RNA polymerase II-dependent promoter.

Authors:  Jia-Wen Li; Tuo Zeng; Zhi-Zhuo Xu; Jin-Jin Li; Hao Hu; Qin Yu; Li Zhou; Ri-Ru Zheng; Jing Luo; Cai-Yun Wang
Journal:  Plant Methods       Date:  2022-03-16       Impact factor: 4.993

Review 6.  Highly Efficient Genome Editing in Plant Protoplasts by Ribonucleoprotein Delivery of CRISPR-Cas12a Nucleases.

Authors:  Yingxiao Zhang; Yanhao Cheng; Hong Fang; Nathaniel Roberts; Liyang Zhang; Christopher A Vakulskas; Randall P Niedz; James N Culver; Yiping Qi
Journal:  Front Genome Ed       Date:  2022-01-31
  6 in total

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