Literature DB >> 30610448

Specific microbes of saliva and vaginal fluid of Guangdong Han females based on 16S rDNA high-throughput sequencing.

Hongyan Huang1, Ting Yao1, Weibin Wu1, Chuangyan Zhai1, Tianshan Guan1, Yali Song2, Yunxia Sun3, Cheng Xiao1, Peiyan Liang1, Ling Chen4.   

Abstract

Vaginal fluid and saliva are of great importance in forensic sciences. The identification of vaginal fluid or saliva is especially important in criminal cases. Microbes are considered as a promising marker for the identification of body fluids. In this study, 18 salivary fluids and 18 vaginal fluid samples were collected from 18 healthy women of the Han population in Guangdong province, China. The microbes of the above samples were analyzed by 16S rDNA high-throughput sequencing. The results showed that the microbes whose proportions are over 1% in saliva samples distributed across 12 genera and 57 operational taxonomic units (OTUs), and in vaginal fluid distributed across 4 genera and 9 OTUs. The microbes that dominated in saliva were quite different from those dominated in vaginal fluids. The linear discriminant analysis (LDA) effect size (LEfSe) algorithm was used to screen out the specific microbes of the studied samples, and the results showed that the specific microbes in saliva samples are Haemophilus parainfluenzae, Veillonella parvula, and Aggregatibacter segnis, while in vaginal fluid is Lactobacillus iners.

Entities:  

Keywords:  16S rDNA; Body fluid identification; Microbes; Saliva; Vaginal fluid

Mesh:

Substances:

Year:  2019        PMID: 30610448     DOI: 10.1007/s00414-018-1986-2

Source DB:  PubMed          Journal:  Int J Legal Med        ISSN: 0937-9827            Impact factor:   2.686


  40 in total

1.  DNA methylation-specific multiplex assays for body fluid identification.

Authors:  Ja Hyun An; Ajin Choi; Kyoung-Jin Shin; Woo Ick Yang; Hwan Young Lee
Journal:  Int J Legal Med       Date:  2012-06-01       Impact factor: 2.686

2.  Differentiation of five body fluids from forensic samples by expression analysis of four microRNAs using quantitative PCR.

Authors:  Eva Sauer; Ann-Kathrin Reinke; Cornelius Courts
Journal:  Forensic Sci Int Genet       Date:  2016-02-12       Impact factor: 4.882

3.  Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs.

Authors:  Erin K Hanson; Helge Lubenow; Jack Ballantyne
Journal:  Anal Biochem       Date:  2009-02-03       Impact factor: 3.365

4.  RNA/DNA co-analysis from blood stains--results of a second collaborative EDNAP exercise.

Authors:  C Haas; E Hanson; M J Anjos; W Bär; R Banemann; A Berti; E Borges; C Bouakaze; A Carracedo; M Carvalho; V Castella; A Choma; G De Cock; M Dötsch; P Hoff-Olsen; P Johansen; F Kohlmeier; P A Lindenbergh; B Ludes; O Maroñas; D Moore; M-L Morerod; N Morling; H Niederstätter; F Noel; W Parson; G Patel; C Popielarz; E Salata; P M Schneider; T Sijen; B Sviežena; M Turanská; L Zatkalíková; J Ballantyne
Journal:  Forensic Sci Int Genet       Date:  2011-04-02       Impact factor: 4.882

Review 5.  Molecular approaches for forensic cell type identification: On mRNA, miRNA, DNA methylation and microbial markers.

Authors:  Titia Sijen
Journal:  Forensic Sci Int Genet       Date:  2014-11-23       Impact factor: 4.882

6.  A collaborative European exercise on mRNA-based body fluid/skin typing and interpretation of DNA and RNA results.

Authors:  M van den Berge; A Carracedo; I Gomes; E A M Graham; C Haas; B Hjort; P Hoff-Olsen; O Maroñas; B Mevåg; N Morling; H Niederstätter; W Parson; P M Schneider; D Syndercombe Court; A Vidaki; T Sijen
Journal:  Forensic Sci Int Genet       Date:  2014-01-28       Impact factor: 4.882

7.  MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation.

Authors:  Dmitry Zubakov; Anton W M Boersma; Ying Choi; Patricia F van Kuijk; Erik A C Wiemer; Manfred Kayser
Journal:  Int J Legal Med       Date:  2010-02-10       Impact factor: 2.686

8.  RNA/DNA co-analysis from human saliva and semen stains--results of a third collaborative EDNAP exercise.

Authors:  C Haas; E Hanson; M J Anjos; R Banemann; A Berti; E Borges; A Carracedo; M Carvalho; C Courts; G De Cock; M Dötsch; S Flynn; I Gomes; C Hollard; B Hjort; P Hoff-Olsen; K Hríbiková; A Lindenbergh; B Ludes; O Maroñas; N McCallum; D Moore; N Morling; H Niederstätter; F Noel; W Parson; C Popielarz; C Rapone; A D Roeder; Y Ruiz; E Sauer; P M Schneider; T Sijen; D Syndercombe Court; B Sviežená; M Turanská; A Vidaki; L Zatkalíková; J Ballantyne
Journal:  Forensic Sci Int Genet       Date:  2012-11-17       Impact factor: 4.882

9.  RNA/DNA co-analysis from human menstrual blood and vaginal secretion stains: results of a fourth and fifth collaborative EDNAP exercise.

Authors:  C Haas; E Hanson; M J Anjos; K N Ballantyne; R Banemann; B Bhoelai; E Borges; M Carvalho; C Courts; G De Cock; K Drobnic; M Dötsch; R Fleming; C Franchi; I Gomes; G Hadzic; S A Harbison; J Harteveld; B Hjort; C Hollard; P Hoff-Olsen; C Hüls; C Keyser; O Maroñas; N McCallum; D Moore; N Morling; H Niederstätter; F Noël; W Parson; C Phillips; C Popielarz; A D Roeder; L Salvaderi; E Sauer; P M Schneider; G Shanthan; D Syndercombe Court; M Turanská; R A H van Oorschot; M Vennemann; A Vidaki; L Zatkalíková; J Ballantyne
Journal:  Forensic Sci Int Genet       Date:  2013-10-05       Impact factor: 4.882

10.  RNA/DNA co-analysis from human skin and contact traces--results of a sixth collaborative EDNAP exercise.

Authors:  C Haas; E Hanson; R Banemann; A M Bento; A Berti; Á Carracedo; C Courts; G De Cock; K Drobnic; R Fleming; C Franchi; I Gomes; G Hadzic; S A Harbison; B Hjort; C Hollard; P Hoff-Olsen; C Keyser; A Kondili; O Maroñas; N McCallum; P Miniati; N Morling; H Niederstätter; F Noël; W Parson; M J Porto; A D Roeder; E Sauer; P M Schneider; G Shanthan; T Sijen; D Syndercombe Court; M Turanská; M van den Berge; M Vennemann; A Vidaki; L Zatkalíková; J Ballantyne
Journal:  Forensic Sci Int Genet       Date:  2015-01-07       Impact factor: 4.882

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  1 in total

1.  High-throughput 16S rDNA sequencing assisting in the detection of bacterial pathogen candidates: a fatal case of necrotizing fasciitis in a child.

Authors:  Dong Qu; Dong-Fang Qiao; Michael Klintschar; Zhi Qu; Xia Yue
Journal:  Int J Legal Med       Date:  2020-09-08       Impact factor: 2.686

  1 in total

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